Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   NYR91_RS11435 Genome accession   NZ_CP103784
Coordinates   2251648..2253138 (-) Length   496 a.a.
NCBI ID   WP_014477209.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2246648..2258138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS11405 (NYR91_11405) gudB 2246792..2248066 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  NYR91_RS11410 (NYR91_11410) mecB 2248222..2248806 (-) 585 WP_003230533.1 genetic competence negative regulator -
  NYR91_RS11415 (NYR91_11415) ypbG 2248965..2249744 (-) 780 WP_014477206.1 metallophosphoesterase -
  NYR91_RS11420 (NYR91_11420) ypbF 2249831..2250274 (-) 444 WP_003230531.1 YpbF family protein -
  NYR91_RS11425 (NYR91_11425) claE 2250337..2251068 (-) 732 WP_014477207.1 LysM peptidoglycan-binding domain-containing protein -
  NYR91_RS11430 (NYR91_11430) ypbD 2251019..2251621 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  NYR91_RS11435 (NYR91_11435) recS 2251648..2253138 (-) 1491 WP_014477209.1 ATP-dependent DNA helicase RecQ Machinery gene
  NYR91_RS11440 (NYR91_11440) gmmB 2253131..2254189 (-) 1059 WP_014477210.1 helix-turn-helix domain-containing protein -
  NYR91_RS11445 (NYR91_11445) fdxA 2254455..2254703 (+) 249 WP_003225461.1 ferredoxin -
  NYR91_RS11450 (NYR91_11450) fmnP 2254743..2255315 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  NYR91_RS11455 (NYR91_11455) serA 2255812..2257389 (+) 1578 WP_014477211.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56520.24 Da        Isoelectric Point: 6.7732

>NTDB_id=625324 NYR91_RS11435 WP_014477209.1 2251648..2253138(-) (recS) [Bacillus subtilis strain RO-NN-1]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQEKQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVEKLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLKKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
LELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=625324 NYR91_RS11435 WP_014477209.1 2251648..2253138(-) (recS) [Bacillus subtilis strain RO-NN-1]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAAACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTTATGAACCTGCTCGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAAGCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTGCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGAAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGATGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TTGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

98.992

100

0.99