Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NYR91_RS10390 Genome accession   NZ_CP103784
Coordinates   2073888..2075663 (-) Length   591 a.a.
NCBI ID   WP_014477066.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068888..2080663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS10370 (NYR91_10370) desE 2069263..2070321 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  NYR91_RS10375 (NYR91_10375) desK 2070441..2071553 (+) 1113 WP_014477063.1 two-component sensor histidine kinase DesK -
  NYR91_RS10380 (NYR91_10380) desR 2071572..2072171 (+) 600 WP_014477064.1 two-component system response regulator DesR -
  NYR91_RS10385 (NYR91_10385) walN 2072777..2073640 (-) 864 WP_003231267.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  NYR91_RS10390 (NYR91_10390) recQ 2073888..2075663 (-) 1776 WP_014477066.1 DNA helicase RecQ Machinery gene
  NYR91_RS10400 (NYR91_10400) azoJ 2076228..2076854 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  NYR91_RS10405 (NYR91_10405) stpP 2077005..2077496 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  NYR91_RS10410 (NYR91_10410) - 2077571..2077894 (-) 324 WP_050809182.1 hypothetical protein -
  NYR91_RS10415 (NYR91_10415) - 2077980..2078207 (+) 228 WP_014477070.1 hypothetical protein -
  NYR91_RS10420 (NYR91_10420) yocM 2078194..2078670 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  NYR91_RS10425 (NYR91_10425) - 2078737..2079000 (+) 264 WP_004399338.1 hypothetical protein -
  NYR91_RS10430 (NYR91_10430) - 2079005..2079238 (+) 234 WP_003231251.1 hypothetical protein -
  NYR91_RS10435 (NYR91_10435) yozO 2079324..2079668 (-) 345 WP_003220141.1 PH domain-containing protein -
  NYR91_RS10440 (NYR91_10440) yozC 2080025..2080228 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67443.85 Da        Isoelectric Point: 6.1778

>NTDB_id=625321 NYR91_RS10390 WP_014477066.1 2073888..2075663(-) (recQ) [Bacillus subtilis strain RO-NN-1]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGNYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVTRKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=625321 NYR91_RS10390 WP_014477066.1 2073888..2075663(-) (recQ) [Bacillus subtilis strain RO-NN-1]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTAGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GAATTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAGAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATTAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAACGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RQC domain (RQC)

(403-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993