Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYR91_RS06725 Genome accession   NZ_CP103784
Coordinates   1292451..1293587 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287451..1298587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS06705 (NYR91_06705) uxaA 1287901..1289394 (+) 1494 WP_014476524.1 UxaA family hydrolase -
  NYR91_RS06710 (NYR91_06710) yjnA 1289433..1290197 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  NYR91_RS06715 (NYR91_06715) bstD 1290422..1290886 (-) 465 WP_014476526.1 DinB family protein -
  NYR91_RS06720 (NYR91_06720) yjoB 1291035..1292306 (+) 1272 WP_014476527.1 ATPase YjoB -
  NYR91_RS06725 (NYR91_06725) rapC 1292451..1293587 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  NYR91_RS06730 (NYR91_06730) phrA 1293577..1293711 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  NYR91_RS06735 (NYR91_06735) yjpA 1293741..1293998 (-) 258 WP_003232731.1 YciI family protein -
  NYR91_RS06740 (NYR91_06740) xlyB 1294119..1295072 (+) 954 WP_014476528.1 N-acetylmuramoyl-L-alanine amidase -
  NYR91_RS06745 (NYR91_06745) yjqA 1295110..1295487 (-) 378 WP_014476529.1 PH domain-containing protein -
  NYR91_RS06750 (NYR91_06750) pghB 1295593..1296195 (+) 603 WP_014476530.1 poly-gamma-glutamate hydrolase family protein -
  NYR91_RS06755 (NYR91_06755) xpdC 1296272..1297108 (+) 837 WP_014476531.1 manganese catalase family protein -
  NYR91_RS06760 (NYR91_06760) xkdA 1297152..1297748 (-) 597 WP_014476532.1 ImmA/IrrE family metallo-endopeptidase -
  NYR91_RS06765 (NYR91_06765) xre 1297911..1298252 (-) 342 WP_014476533.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=625294 NYR91_RS06725 WP_015252291.1 1292451..1293587(+) (rapC) [Bacillus subtilis strain RO-NN-1]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=625294 NYR91_RS06725 WP_015252291.1 1292451..1293587(+) (rapC) [Bacillus subtilis strain RO-NN-1]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAAGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATTGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
TGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418