Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NYR91_RS06195 Genome accession   NZ_CP103784
Coordinates   1203943..1205772 (+) Length   609 a.a.
NCBI ID   WP_187955983.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198943..1210772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS06160 (NYR91_06160) yjbC 1199617..1200195 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NYR91_RS06165 (NYR91_06165) spx 1200376..1200771 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  NYR91_RS06170 (NYR91_06170) yjbE 1200812..1201468 (-) 657 WP_003232944.1 TerC family protein -
  NYR91_RS06175 (NYR91_06175) - 1201638..1201778 (+) 141 WP_119122854.1 hypothetical protein -
  NYR91_RS06180 (NYR91_06180) mecA 1201745..1202401 (+) 657 WP_014476436.1 adaptor protein MecA Regulator
  NYR91_RS06185 (NYR91_06185) - 1202396..1202518 (-) 123 WP_003245684.1 hypothetical protein -
  NYR91_RS06190 (NYR91_06190) coiA 1202562..1203713 (+) 1152 WP_014476437.1 competence protein CoiA Machinery gene
  NYR91_RS06195 (NYR91_06195) pepF 1203943..1205772 (+) 1830 WP_187955983.1 oligoendopeptidase F Regulator
  NYR91_RS06200 (NYR91_06200) - 1205810..1205977 (-) 168 WP_003244944.1 hypothetical protein -
  NYR91_RS06205 (NYR91_06205) spxH 1206292..1207191 (-) 900 WP_014476439.1 protease adaptor protein SpxH -
  NYR91_RS06210 (NYR91_06210) bhbI 1207188..1207586 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  NYR91_RS06215 (NYR91_06215) cwlQ 1207837..1208571 (-) 735 WP_014476440.1 bifunctional muramidase/murein lytic transglycosylase -
  NYR91_RS06220 (NYR91_06220) yjbK 1208586..1209158 (-) 573 WP_014476441.1 CYTH domain-containing protein -
  NYR91_RS06225 (NYR91_06225) - 1209283..1209651 (+) 369 WP_014476442.1 hypothetical protein -
  NYR91_RS06230 (NYR91_06230) yjbM 1209680..1210315 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70129.96 Da        Isoelectric Point: 5.1000

>NTDB_id=625293 NYR91_RS06195 WP_187955983.1 1203943..1205772(+) (pepF) [Bacillus subtilis strain RO-NN-1]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEDWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=625293 NYR91_RS06195 WP_187955983.1 1203943..1205772(+) (pepF) [Bacillus subtilis strain RO-NN-1]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGACTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAGGAATTGAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCGCTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCTATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTTAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTCTACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTGAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCAGGGATG
AAGGTAACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAGGCGCTCCTAGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGAGGAACGGTCTTCAGACAAACGATGTTTGCTGAATTTGAACATCTGATCCATACAAAGGCGCAA
GAAGGCGAGCCACTTACACCTGAGCTTCTGACAAATGTCTATTACGATCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTG
AAAGCGGGAAGTTCACAATACCCGATTGATGTCTTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

97.537

0.478