Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   FNL60_RS08640 Genome accession   NZ_AP019720
Coordinates   1703210..1703845 (-) Length   211 a.a.
NCBI ID   WP_002264906.1    Uniprot ID   Q8DVU8
Organism   Streptococcus mutans strain NBRC 13955     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1698210..1708845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS08620 (SM3g_16080) - 1699097..1699810 (-) 714 WP_002280297.1 ABC transporter permease -
  FNL60_RS08625 (SM3g_16090) - 1699803..1700648 (-) 846 WP_002280296.1 ABC transporter ATP-binding protein -
  FNL60_RS08630 (SM3g_16100) - 1701110..1701340 (+) 231 WP_002268030.1 DNA-dependent RNA polymerase subunit epsilon -
  FNL60_RS08635 (SM3g_16110) rnjA 1701342..1703024 (+) 1683 WP_002264907.1 ribonuclease J1 -
  FNL60_RS08640 (SM3g_16120) lytF 1703210..1703845 (-) 636 WP_002264906.1 COG3942 and LysM peptidoglycan-binding domain-containing protein Regulator
  FNL60_RS08645 (SM3g_16130) - 1703993..1705429 (-) 1437 WP_002262483.1 glutamate synthase subunit beta -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22470.57 Da        Isoelectric Point: 4.1028

>NTDB_id=62527 FNL60_RS08640 WP_002264906.1 1703210..1703845(-) (lytF) [Streptococcus mutans strain NBRC 13955]
MKKQFLEKAVFTVAATAATVVLGNKMADADTYTLQEGDSFFSVAQRYHMDAYELASMNGKDITSLILPGQTLTVNGSAAP
DNQAAAPTDTTQATTETNDANANTYPVGQCTWGVKAVATWAGDWWGNGGDWASSASAQGYTVGNTPAVGSIMCWTDGGYG
HVAYVTAVGEDGKVQVLESNYKDQQWVDNYRGWFDPNNSGTPGSVSYIYPN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=62527 FNL60_RS08640 WP_002264906.1 1703210..1703845(-) (lytF) [Streptococcus mutans strain NBRC 13955]
ATGAAAAAACAATTTTTGGAAAAAGCTGTGTTTACTGTTGCGGCTACGGCAGCAACAGTTGTTTTAGGAAATAAAATGGC
TGATGCAGACACTTATACTCTTCAAGAAGGAGATTCTTTTTTCAGTGTTGCTCAACGATATCATATGGATGCTTATGAGT
TAGCTTCTATGAATGGAAAAGATATTACCAGTCTGATTTTGCCGGGTCAGACTTTAACTGTTAATGGTTCGGCAGCACCG
GATAATCAGGCGGCAGCGCCAACTGACACTACGCAAGCAACCACTGAAACGAATGATGCGAATGCCAATACTTATCCTGT
TGGTCAATGTACTTGGGGGGTTAAAGCTGTTGCAACTTGGGCAGGCGACTGGTGGGGCAATGGCGGTGATTGGGCCTCTA
GTGCTTCTGCACAAGGTTACACTGTCGGTAACACTCCGGCAGTAGGGTCTATTATGTGTTGGACAGATGGTGGTTATGGA
CATGTTGCCTATGTCACAGCTGTTGGTGAAGATGGTAAAGTTCAAGTACTGGAATCCAATTATAAAGATCAACAATGGGT
TGATAACTATCGTGGTTGGTTTGATCCAAATAATAGTGGAACACCAGGCAGTGTCAGTTATATTTATCCTAACTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(102-180)

LysM domain (LysM)

(32-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

55.072

65.403

0.36

Multiple sequence alignment