Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYR91_RS03710 Genome accession   NZ_CP103784
Coordinates   728075..729205 (+) Length   376 a.a.
NCBI ID   WP_041519139.1    Uniprot ID   -
Organism   Bacillus subtilis strain RO-NN-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 723075..734205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR91_RS03695 (NYR91_03695) yeeF 723433..725442 (-) 2010 WP_014476057.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  NYR91_RS03700 (NYR91_03700) - 725653..726660 (+) 1008 WP_014476058.1 hypothetical protein -
  NYR91_RS03705 (NYR91_03705) - 726768..727928 (+) 1161 WP_014476059.1 lysozyme inhibitor LprI family protein -
  NYR91_RS03710 (NYR91_03710) rapC 728075..729205 (+) 1131 WP_041519139.1 response regulator aspartate phosphatase RapH Regulator
  NYR91_RS03715 (NYR91_03715) phrH 729195..729371 (+) 177 WP_041519141.1 hypothetical protein -
  NYR91_RS03720 (NYR91_03720) yeeI 729531..730250 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NYR91_RS03725 (NYR91_03725) - 730384..730809 (+) 426 WP_041519143.1 hypothetical protein -
  NYR91_RS03730 (NYR91_03730) yezE 730923..731507 (+) 585 WP_014476062.1 TetR/AcrR family transcriptional regulator -
  NYR91_RS03735 (NYR91_03735) yesE 731587..732030 (+) 444 WP_014476063.1 nuclear transport factor 2 family protein -
  NYR91_RS03740 (NYR91_03740) yesF 732027..732895 (+) 869 Protein_686 NmrA family NAD(P)-binding protein -
  NYR91_RS03745 (NYR91_03745) cotJA 733022..733270 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  NYR91_RS03750 (NYR91_03750) cotJB 733254..733517 (+) 264 WP_003219491.1 spore coat protein CotJB -
  NYR91_RS03755 (NYR91_03755) cotJC 733532..734101 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44067.50 Da        Isoelectric Point: 6.1536

>NTDB_id=625268 NYR91_RS03710 WP_041519139.1 728075..729205(+) (rapC) [Bacillus subtilis strain RO-NN-1]
MSQVIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRKAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFHFIEEGLDRITTRSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=625268 NYR91_RS03710 WP_041519139.1 728075..729205(+) (rapC) [Bacillus subtilis strain RO-NN-1]
TTGAGTCAAGTCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTTCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCAAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATTCAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTTCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAGACACAGAAGGCGTTTCATTTCATAGAAGAAGGATTAGACCGTATCACAACTCGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTTTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.318

100

0.404