Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LNN50_RS14715 Genome accession   NZ_CP086510
Coordinates   3037005..3037634 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Ec-050-T0     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3032005..3042634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNN50_RS14700 (LNN50_14710) helD 3032247..3034301 (-) 2055 WP_001295354.1 DNA helicase IV -
  LNN50_RS14705 (LNN50_14715) yccF 3034424..3034870 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LNN50_RS14710 (LNN50_14720) yccS 3034880..3037042 (+) 2163 WP_000875058.1 YccS family putative transporter -
  LNN50_RS14715 (LNN50_14725) sxy/tfoX 3037005..3037634 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LNN50_RS14720 (LNN50_14730) sulA 3037853..3038362 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LNN50_RS14725 (LNN50_14735) ompA 3038719..3039759 (+) 1041 WP_000750416.1 porin OmpA -
  LNN50_RS14730 (LNN50_14740) matP 3039835..3040287 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LNN50_RS14735 (LNN50_14745) ycbZ 3040473..3042233 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=625217 LNN50_RS14715 WP_000839153.1 3037005..3037634(-) (sxy/tfoX) [Escherichia coli strain Ec-050-T0]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=625217 LNN50_RS14715 WP_000839153.1 3037005..3037634(-) (sxy/tfoX) [Escherichia coli strain Ec-050-T0]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1