Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   N288_RS17025 Genome accession   NC_022524
Coordinates   3354064..3354825 (-) Length   253 a.a.
NCBI ID   WP_009791403.1    Uniprot ID   U5LG29
Organism   Bacillus infantis NRRL B-14911     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3349064..3359825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS17010 (N288_18365) - 3349488..3350120 (-) 633 WP_009791406.1 helix-turn-helix transcriptional regulator -
  N288_RS17015 (N288_18370) glyS 3350309..3352381 (-) 2073 WP_009791405.1 glycine--tRNA ligase subunit beta -
  N288_RS17020 (N288_18375) glyQ 3352368..3353264 (-) 897 WP_022544204.1 glycine--tRNA ligase subunit alpha -
  N288_RS17025 (N288_18380) recO 3354064..3354825 (-) 762 WP_009791403.1 DNA repair protein RecO Machinery gene
  N288_RS24820 (N288_18385) - 3354855..3354998 (-) 144 WP_009791402.1 YqzL family protein -
  N288_RS17030 (N288_18390) era 3355155..3356084 (-) 930 WP_009791401.1 GTPase Era -
  N288_RS17035 (N288_18395) - 3356077..3356475 (-) 399 WP_009791400.1 cytidine deaminase -
  N288_RS17040 (N288_18400) - 3356788..3357183 (-) 396 WP_009791399.1 diacylglycerol kinase family protein -
  N288_RS17045 (N288_18405) ybeY 3357161..3357631 (-) 471 WP_009791398.1 rRNA maturation RNase YbeY -
  N288_RS17050 (N288_18410) - 3357628..3359808 (-) 2181 WP_022544205.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29010.58 Da        Isoelectric Point: 8.7431

>NTDB_id=62512 N288_RS17025 WP_009791403.1 3354064..3354825(-) (recO) [Bacillus infantis NRRL B-14911]
MFEKCEGIVLRTVNYGESNKIVTLYTREWGKVGVMARGAKKPNSRLSAVTQPFTYGYFLVQRSSGLGLMQQGEMVSSMRS
IREDIFLTAYASYIVDLTDKTVEEKKPNPFHFELLHQTLNYMNEGYDPEIMVNIYEMKMLNSLGLYPVLDKCSVCGSTDG
HFSFSIREGGLICHRCLEKDPYHYKISPAALKLLRLFYYFDLSRLGNISVKPETKAELKKIISAYYNEYSGLSLKTRKFL
DQMDKMGGFFEKG

Nucleotide


Download         Length: 762 bp        

>NTDB_id=62512 N288_RS17025 WP_009791403.1 3354064..3354825(-) (recO) [Bacillus infantis NRRL B-14911]
GTGTTTGAAAAATGCGAAGGAATCGTATTGAGAACAGTCAATTATGGTGAATCCAATAAAATAGTTACTCTTTATACCCG
GGAATGGGGTAAGGTTGGCGTGATGGCCAGAGGTGCAAAAAAGCCTAACAGCAGGCTTTCGGCTGTCACCCAGCCTTTTA
CTTATGGCTACTTCCTCGTTCAGAGAAGCAGCGGGCTGGGGCTTATGCAGCAGGGGGAAATGGTCTCCTCCATGCGCTCG
ATCAGGGAGGATATCTTCCTGACGGCATATGCCAGCTATATTGTGGATCTGACTGATAAAACAGTCGAAGAGAAGAAGCC
GAATCCGTTCCATTTCGAACTGCTTCACCAGACTTTGAATTATATGAACGAAGGCTATGATCCTGAAATCATGGTGAATA
TTTACGAAATGAAAATGCTCAATTCCCTTGGACTTTATCCGGTCCTGGATAAATGCTCTGTCTGCGGAAGCACTGATGGG
CATTTTTCTTTTTCCATCAGGGAGGGCGGTCTCATTTGCCACCGCTGTCTGGAGAAAGACCCGTACCACTATAAGATTTC
GCCGGCAGCTTTAAAACTCCTGCGCCTTTTTTATTATTTTGATTTGTCGAGGCTTGGGAATATATCAGTAAAGCCGGAAA
CCAAAGCGGAACTGAAAAAAATTATCTCAGCCTACTATAATGAATACTCCGGCCTCAGTCTGAAAACCAGAAAGTTCCTG
GACCAGATGGATAAGATGGGCGGTTTCTTTGAAAAAGGATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5LG29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

65.447

97.233

0.636

Multiple sequence alignment