Detailed information NTG0624911

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NYO14_RS24960
• Genome accession: NZ_CP103755
• Coordinates: 5040847..5041872 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain p11B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 5035847..5046872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYO14_RS24940 (NYO14_24940)	metJ	5037032..5037349 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NYO14_RS24945 (NYO14_24945)	yiiX	5037409..5038017 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
NYO14_RS24950 (NYO14_24950)	rpmE	5038078..5038290 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NYO14_RS24955 (NYO14_24955)	priA	5038493..5040691 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
NYO14_RS24960 (NYO14_24960)	cytR	5040847..5041872 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
NYO14_RS24965 (NYO14_24965)	ftsN	5041964..5042923 (+)	960	WP_000068834.1	cell division protein FtsN	-
NYO14_RS24970 (NYO14_24970)	hslV	5043016..5043546 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NYO14_RS24975 (NYO14_24975)	hslU	5043556..5044887 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
NYO14_RS24980 (NYO14_24980)	menA	5044954..5045880 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NYO14_RS24985 (NYO14_24985)	rraA	5045973..5046458 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NYO14_RS24990 (NYO14_24990)	zapB	5046543..5046788 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=624911 NYO14_RS24960 WP_000644908.1 5040847..5041872(+) (cytR) [Escherichia coli strain p11B]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=624911 NYO14_RS24960 WP_000644908.1 5040847..5041872(+) (cytR) [Escherichia coli strain p11B]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625