Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   FNL60_RS05595 Genome accession   NZ_AP019720
Coordinates   1076595..1077665 (+) Length   356 a.a.
NCBI ID   WP_002279939.1    Uniprot ID   -
Organism   Streptococcus mutans strain NBRC 13955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1071595..1082665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL60_RS05570 (SM3g_10220) - 1072114..1072947 (+) 834 WP_002279941.1 glycosyltransferase family 8 protein -
  FNL60_RS05575 (SM3g_10230) - 1073080..1073772 (+) 693 WP_002262300.1 response regulator transcription factor -
  FNL60_RS05580 (SM3g_10240) - 1073772..1074650 (+) 879 WP_002265019.1 sensor histidine kinase -
  FNL60_RS05585 (SM3g_10250) - 1074698..1075441 (-) 744 WP_002279940.1 ABC transporter permease -
  FNL60_RS05590 (SM3g_10260) - 1075462..1076370 (-) 909 WP_002265017.1 ABC transporter ATP-binding protein -
  FNL60_RS05595 (SM3g_10270) xerS 1076595..1077665 (+) 1071 WP_002279939.1 tyrosine recombinase XerS Machinery gene
  FNL60_RS05600 - 1077957..1078093 (+) 137 Protein_1033 IS3 family transposase -
  FNL60_RS05605 (SM3g_10280) - 1078161..1079552 (-) 1392 WP_002280284.1 oxaloacetate decarboxylase subunit alpha -
  FNL60_RS05610 (SM3g_10290) citX 1079565..1080101 (-) 537 WP_002270837.1 citrate lyase holo-[acyl-carrier protein] synthase -
  FNL60_RS05615 (SM3g_10300) citF 1080094..1081629 (-) 1536 WP_002280283.1 citrate lyase subunit alpha -
  FNL60_RS05620 (SM3g_10310) citE 1081616..1082518 (-) 903 WP_002280282.1 citrate (pro-3S)-lyase subunit beta -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41606.90 Da        Isoelectric Point: 9.6657

>NTDB_id=62489 FNL60_RS05595 WP_002279939.1 1076595..1077665(+) (xerS) [Streptococcus mutans strain NBRC 13955]
MRRELLLEKIDELKELMPWYVLEYYQSKLTIPYSFTTLYEYLKEYRRFFEWLINSGVSDANKLADIPLETLEHLSKKDME
SFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDS
VNVAGFAKPYLENYITIRRGRYKAEKTDLAFFLSEYRGVPNRMDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=62489 FNL60_RS05595 WP_002279939.1 1076595..1077665(+) (xerS) [Streptococcus mutans strain NBRC 13955]
ATGAGACGTGAACTCTTACTTGAAAAAATTGATGAACTTAAGGAACTTATGCCTTGGTATGTGCTAGAGTATTATCAATC
TAAATTGACAATTCCTTATAGTTTTACGACCTTATACGAATATTTAAAAGAATATCGGCGTTTCTTTGAATGGTTAATCA
ATTCTGGCGTTTCTGATGCGAATAAACTTGCCGATATTCCGCTGGAAACTTTGGAGCATCTTAGTAAAAAAGATATGGAA
TCCTTTATTCTTTATTTACGAGAACGAACTCTTTTAAACACTAAAAACAAACGTCAAGGTGTTTCTCAGACAACGATAAA
CCGCACACTTTCAGCCTTATCAAGCCTTTATAAATACTTGACTGAGGAAGTTGAAAATGCTGATGGTGAACCTTATTTTT
ATCGAAATGTCATGAAAAAGGTATCAACTAAAAAGAAAAAGGAAACATTGGCCGCACGAGCTGAGAATATTAAACAAAAG
CTCTTTTTAGGCAATGAAACAATGGAATTTTTAGAATATGTGGATTGTGAATATGAACACAAACTTTCTAAACGCGCTCT
TTCCTCTTTTCGAAAAAATAAAGAAAGAGATTTGGCAATTATTGCTTTGCTGCTAGCATCTGGAGTTCGTCTTTCAGAGG
CTGTTAACCTTGATCTTAAGGATGTTAATCTCAATATGATGATTATTGAAGTTACCCGTAAGGGCGGCAAACACGATTCG
GTCAATGTCGCTGGTTTCGCTAAACCTTATTTAGAAAACTACATTACTATCAGACGGGGGCGCTACAAGGCTGAAAAGAC
TGATCTAGCTTTCTTTTTATCCGAATATCGTGGTGTTCCTAATCGCATGGATGCTTCTTCTATTGAAAAAATGGTTGCTA
AATATTCGCAAGATTTCAAAATCCGCGTCACTCCCCACAAACTAAGACACACGCTTGCAACTAGATTATACGATGCTACC
AAATCACAAGTTTTGGTCAGTCATCAATTAGGTCATGCTTCTACTCAAGTAACAGACCTTTATACTCATATCGTTAATGA
TGAACAAAAAAATGCTTTAGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826