Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N288_RS00250 Genome accession   NC_022524
Coordinates   46770..47054 (-) Length   94 a.a.
NCBI ID   WP_009791698.1    Uniprot ID   U5L5M6
Organism   Bacillus infantis NRRL B-14911     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41770..52054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS00215 (N288_00215) - 42083..42523 (+) 441 WP_009791691.1 YaaR family protein -
  N288_RS00220 (N288_00220) holB 42537..43544 (+) 1008 WP_009791692.1 DNA polymerase III subunit delta' -
  N288_RS00225 (N288_00225) - 43537..44364 (+) 828 WP_009791693.1 stage 0 sporulation family protein -
  N288_RS00230 (N288_00230) yabA 44378..44746 (+) 369 WP_009791694.1 DNA replication initiation control protein YabA -
  N288_RS00235 (N288_00235) - 44805..45545 (+) 741 WP_009791695.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  N288_RS00240 (N288_00240) - 45535..45822 (+) 288 WP_009791696.1 GIY-YIG nuclease family protein -
  N288_RS00245 (N288_00245) rsmI 45800..46678 (+) 879 WP_009791697.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  N288_RS00250 (N288_00250) abrB 46770..47054 (-) 285 WP_009791698.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  N288_RS00255 (N288_00255) metG 48236..50197 (+) 1962 WP_009796187.1 methionine--tRNA ligase -
  N288_RS00260 (N288_00260) - 50349..51119 (+) 771 WP_009796186.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 5.2069

>NTDB_id=62480 N288_RS00250 WP_009791698.1 46770..47054(-) (abrB) [Bacillus infantis NRRL B-14911]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDDNITLAGGKLILSRDGAE
QLLKEIQSTFETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=62480 N288_RS00250 WP_009791698.1 46770..47054(-) (abrB) [Bacillus infantis NRRL B-14911]
ATGAAATCTACAGGTATTGTTCGTAAAGTTGATGAGCTGGGACGCGTAGTTATTCCGATTGAGTTAAGACGTACACTTGG
CATCGCCGAAAAGGACGCTCTTGAAATCTATGTTGATGATGAGCGCATCATTTTGAAAAAATATAAGCCAAACATGACTT
GCCAGGTTACCGGCGAAGTCTCTGATGATAACATCACACTTGCAGGCGGCAAGCTGATCCTGAGCCGTGACGGTGCAGAG
CAGCTGCTGAAAGAAATCCAAAGCACATTTGAAACTGCAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L5M6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

84.043

100

0.84

Multiple sequence alignment