Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMJ45_RS08050 Genome accession   NZ_CP086408
Coordinates   1725722..1726348 (+) Length   208 a.a.
NCBI ID   WP_013097255.1    Uniprot ID   A0A427KI93
Organism   Enterobacter cloacae strain POL9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1720722..1731348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMJ45_RS08030 (LMJ45_08030) - 1721122..1722882 (-) 1761 WP_028027913.1 Lon protease family protein -
  LMJ45_RS08035 (LMJ45_08035) matP 1723069..1723521 (+) 453 WP_013097258.1 macrodomain Ter protein MatP -
  LMJ45_RS08040 (LMJ45_08040) ompA 1723585..1724640 (-) 1056 WP_014883252.1 porin OmpA -
  LMJ45_RS08045 (LMJ45_08045) sulA 1724995..1725504 (-) 510 WP_013097256.1 SOS-induced cell division inhibitor SulA -
  LMJ45_RS08050 (LMJ45_08050) sxy/tfoX 1725722..1726348 (+) 627 WP_013097255.1 TfoX/Sxy family DNA transformation protein Regulator
  LMJ45_RS08055 (LMJ45_08055) yccS 1726305..1728467 (-) 2163 WP_014831317.1 YccS family putative transporter -
  LMJ45_RS08060 (LMJ45_08060) - 1728487..1728933 (-) 447 WP_013097253.1 YccF domain-containing protein -
  LMJ45_RS08065 (LMJ45_08065) helD 1729056..1731110 (+) 2055 WP_128311035.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24000.57 Da        Isoelectric Point: 9.2254

>NTDB_id=624792 LMJ45_RS08050 WP_013097255.1 1725722..1726348(+) (sxy/tfoX) [Enterobacter cloacae strain POL9]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEESAKYCVKNGSSFLTLMKRGRPILLN
YYRVDDGLWQDRERLLQLSSYALNAARKERIQRYQRNRLKDLPNLTFQLEVLLCEAGITNEDTLRSLGARTSWLKLRAKN
KALSIKVLFALEGAIEGLHEAALPAEIRRELTEWFNALPEPQENRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=624792 LMJ45_RS08050 WP_013097255.1 1725722..1726348(+) (sxy/tfoX) [Enterobacter cloacae strain POL9]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCATTAGGAGAAATTCATCATCGTGCGCT
TTTTGGTGGCTATACCCTGGCCGTCGATGAGGCGGTGTTTGCCATGGTGTCAGACGGTGAGCTTTACCTTCGCGCCTGTG
AGGAAAGTGCGAAGTACTGTGTAAAAAACGGATCCTCCTTTTTGACCTTAATGAAACGCGGCCGGCCGATCCTTCTCAAC
TATTATCGTGTGGATGACGGTCTTTGGCAGGACAGGGAGCGGCTGCTTCAGCTTTCCTCTTACGCGCTTAATGCCGCGCG
TAAAGAGCGCATACAACGCTACCAGCGAAACCGGCTTAAGGATCTGCCTAACCTGACTTTTCAGCTGGAAGTGCTGCTCT
GTGAAGCCGGGATTACCAACGAAGATACCCTCCGGTCGCTGGGAGCCAGAACGAGCTGGCTAAAGCTGCGGGCAAAAAAT
AAAGCGCTCAGTATTAAAGTACTGTTTGCCCTGGAAGGGGCGATTGAGGGCCTGCATGAAGCGGCACTCCCGGCGGAAAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCGCTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427KI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567