Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   N288_RS00025 Genome accession   NC_022524
Coordinates   3700..4818 (+) Length   372 a.a.
NCBI ID   WP_009791669.1    Uniprot ID   U5L4I5
Organism   Bacillus infantis NRRL B-14911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N288_RS00005 (N288_00005) dnaA 520..1866 (+) 1347 WP_022543190.1 chromosomal replication initiator protein DnaA -
  N288_RS00010 (N288_00010) dnaN 2050..3186 (+) 1137 WP_009791671.1 DNA polymerase III subunit beta -
  N288_RS00020 (N288_00020) yaaA 3462..3674 (+) 213 WP_009791670.1 S4 domain-containing protein YaaA -
  N288_RS00025 (N288_00025) recF 3700..4818 (+) 1119 WP_009791669.1 DNA replication/repair protein RecF Machinery gene
  N288_RS00030 (N288_00030) remB 4828..5073 (+) 246 WP_009791668.1 extracellular matrix regulator RemB -
  N288_RS00035 (N288_00035) gyrB 5193..7115 (+) 1923 WP_009791667.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 42937.35 Da        Isoelectric Point: 8.1012

>NTDB_id=62478 N288_RS00025 WP_009791669.1 3700..4818(+) (recF) [Bacillus infantis NRRL B-14911]
MFIEQLLLRNYRNYESLEVQFEDKVNVIIGQNAQGKTNVMESIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVRKNHGP
LPMQLVISKKGKKAKCNHIEQQRLSQYVGNMNVVMFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDVGQYNKILQQR
NHYLKLLQTRKQTDQAMLEILTEQFIEMAARIVAKRFEFLKLLQKWAMPIHEGISRGLETLKIEYKPSADVSDGQELSKM
IKVYQEKFEKVRGREIDRGVTMFGPHRDDLAFYVNGRDVQTFGSQGQQRTTALSLKLAEIELIHSEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIDHQTLKEAAAFEVEAGTLKKIQ

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=62478 N288_RS00025 WP_009791669.1 3700..4818(+) (recF) [Bacillus infantis NRRL B-14911]
ATGTTTATTGAGCAGTTGCTCTTAAGGAATTACCGGAACTATGAATCGCTTGAGGTTCAGTTTGAAGATAAAGTGAATGT
CATAATCGGCCAGAATGCCCAGGGCAAGACGAATGTCATGGAATCCATCTATGTGCTGGCAATGGCGAAGTCCCACCGGA
CGTCAAATGATAAAGAACTTATACGGTGGGATGAGGATTATGCTAAAATAGAAGGAAGGGTCCGCAAAAATCATGGACCT
TTGCCGATGCAGCTCGTCATTTCCAAAAAGGGGAAAAAGGCGAAGTGCAACCATATTGAGCAGCAGAGATTGAGCCAATA
TGTCGGGAATATGAATGTAGTGATGTTTGCTCCTGAGGATCTCCACCTTGTCAAAGGGAGCCCCCAGGTCAGACGCCGCT
TTATTGATATGGAAATCGGCCAGGTATCGCCGGTTTATTTGCACGATGTCGGCCAATACAATAAAATCCTCCAGCAGCGG
AACCACTACCTGAAGCTTCTGCAGACAAGGAAGCAGACCGATCAGGCGATGCTGGAAATCCTGACGGAGCAGTTCATTGA
GATGGCGGCGAGGATCGTGGCGAAGCGCTTCGAATTCCTTAAGCTCCTCCAAAAATGGGCAATGCCGATCCATGAAGGCA
TATCAAGGGGCCTTGAGACCCTGAAGATTGAGTATAAGCCGTCTGCCGATGTATCAGATGGCCAGGAATTGTCGAAAATG
ATAAAAGTATACCAGGAAAAATTTGAAAAAGTCAGAGGACGGGAAATCGACCGGGGAGTCACCATGTTTGGCCCCCACCG
GGATGATCTGGCTTTTTATGTAAATGGCAGGGATGTCCAGACATTCGGCTCCCAGGGCCAGCAGAGGACGACCGCCCTTT
CTCTGAAATTGGCGGAAATCGAGCTGATCCACTCTGAAATCGGCGAATACCCCATTCTCCTGCTTGATGATGTACTGTCA
GAGCTGGATGATTACAGGCAGTCCCACCTGCTGAACACGATCCAGGGCAAAGTGCAGACCTTTGTGACGACAACAAGCGT
CGACGGGATCGACCATCAGACGCTGAAAGAGGCAGCTGCATTCGAGGTGGAGGCAGGTACGCTGAAAAAAATCCAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U5L4I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

74.054

99.462

0.737

Multiple sequence alignment