Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMJ44_RS07520 Genome accession   NZ_CP086405
Coordinates   1621783..1622409 (+) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain POL1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616783..1627409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMJ44_RS07500 (LMJ44_07505) - 1617182..1618942 (-) 1761 WP_063418688.1 Lon protease family protein -
  LMJ44_RS07505 (LMJ44_07510) matP 1619129..1619581 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LMJ44_RS07510 (LMJ44_07515) ompA 1619646..1620701 (-) 1056 WP_008499928.1 porin OmpA -
  LMJ44_RS07515 (LMJ44_07520) sulA 1621056..1621565 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  LMJ44_RS07520 (LMJ44_07525) sxy/tfoX 1621783..1622409 (+) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  LMJ44_RS07525 (LMJ44_07530) yccS 1622366..1624528 (-) 2163 WP_063418689.1 YccS family putative transporter -
  LMJ44_RS07530 (LMJ44_07535) - 1624548..1624994 (-) 447 WP_008499924.1 YccF domain-containing protein -
  LMJ44_RS07535 (LMJ44_07540) helD 1625118..1627172 (+) 2055 WP_021240854.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=624771 LMJ44_RS07520 WP_008499926.1 1621783..1622409(+) (sxy/tfoX) [Enterobacter roggenkampii strain POL1]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=624771 LMJ44_RS07520 WP_008499926.1 1621783..1622409(+) (sxy/tfoX) [Enterobacter roggenkampii strain POL1]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567