Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LMK00_RS11625 Genome accession   NZ_CP086395
Coordinates   2338003..2338791 (+) Length   262 a.a.
NCBI ID   WP_252175485.1    Uniprot ID   A0A9Q8Y2L9
Organism   Lactococcus formosensis strain I4/6O     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333003..2343791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS11625 (LMK00_11620) spo0J 2338003..2338791 (+) 789 WP_252175485.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 30505.33 Da        Isoelectric Point: 9.2554

>NTDB_id=624765 LMK00_RS11625 WP_252175485.1 2338003..2338791(+) (spo0J) [Lactococcus formosensis strain I4/6O]
MEEKIYQLNIEDISKNPYQPRRNFDSDKLNELSHSIEVNGVLQPIIVRKSNLFGYELLAGERRLRASKLANLDKIPAIIR
SYSDNDMMVLSILENLQRDDMSPLDEAESIKKIIEKSSMTHDEVAKYLGKSRSYISNLLRILKLPQEILLLLEEKKISLA
HARTLLAEENKEKQVFLAHKTIQEKLNVRQLEDLIYQKDSNKKISNKKSIYIVEKEKELTKCLGISNKISYNEKLQKGKL
ELYFESLEKLEELLNKLTKNSQ

Nucleotide


Download         Length: 789 bp        

>NTDB_id=624765 LMK00_RS11625 WP_252175485.1 2338003..2338791(+) (spo0J) [Lactococcus formosensis strain I4/6O]
ATGGAAGAAAAAATTTATCAACTAAATATAGAAGATATTAGTAAAAACCCTTATCAACCACGTAGAAATTTTGATAGTGA
TAAATTAAATGAATTATCGCACTCTATAGAAGTTAATGGTGTACTTCAACCTATTATTGTTCGTAAAAGTAATCTCTTTG
GCTACGAGCTTCTTGCTGGAGAACGACGTTTACGGGCATCAAAGCTGGCAAATCTTGATAAGATTCCAGCGATTATTCGT
TCTTATTCTGATAATGACATGATGGTGCTTTCTATTTTAGAAAACTTACAACGCGATGATATGAGTCCATTAGACGAAGC
TGAAAGCATCAAGAAAATTATAGAGAAAAGTTCAATGACTCATGATGAAGTCGCTAAGTATCTCGGCAAATCTCGCTCTT
ACATTTCTAATCTCCTGCGAATTTTGAAACTTCCTCAAGAAATACTTCTTCTATTAGAAGAAAAAAAAATTAGTTTGGCT
CACGCTCGGACACTTCTTGCTGAAGAAAATAAAGAAAAGCAAGTTTTCTTAGCTCACAAGACCATTCAAGAAAAACTTAA
TGTCCGTCAACTTGAAGATCTTATTTACCAAAAAGATTCAAATAAAAAAATCAGTAACAAAAAAAGTATTTATATAGTAG
AAAAGGAAAAAGAACTTACAAAATGTTTAGGTATAAGTAATAAAATTTCATATAATGAAAAGCTTCAAAAAGGAAAGCTT
GAATTGTACTTTGAAAGTCTAGAAAAACTCGAAGAACTACTGAATAAACTCACAAAAAATTCACAGTAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.225

98.473

0.485