Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LMK00_RS10865 Genome accession   NZ_CP086395
Coordinates   2202373..2203416 (-) Length   347 a.a.
NCBI ID   WP_252175453.1    Uniprot ID   -
Organism   Lactococcus formosensis strain I4/6O     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197373..2208416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMK00_RS10850 (LMK00_10845) rpsB 2197405..2198178 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  LMK00_RS10855 (LMK00_10850) - 2198453..2199493 (+) 1041 WP_252175452.1 lactonase family protein -
  LMK00_RS10860 (LMK00_10855) adhE 2199648..2202341 (+) 2694 WP_017369504.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  LMK00_RS10865 (LMK00_10860) sepM 2202373..2203416 (-) 1044 WP_252175453.1 SepM family pheromone-processing serine protease Regulator
  LMK00_RS10870 (LMK00_10865) coaD 2203406..2203903 (-) 498 WP_252175454.1 pantetheine-phosphate adenylyltransferase -
  LMK00_RS10875 (LMK00_10870) rsmD 2203893..2204432 (-) 540 WP_338155778.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LMK00_RS10880 (LMK00_10875) - 2204527..2205873 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37717.96 Da        Isoelectric Point: 6.8789

>NTDB_id=624762 LMK00_RS10865 WP_252175453.1 2202373..2203416(-) (sepM) [Lactococcus formosensis strain I4/6O]
MKNEKIKKHKKLKLFFAVALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGASVPINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=624762 LMK00_RS10865 WP_252175453.1 2202373..2203416(-) (sepM) [Lactococcus formosensis strain I4/6O]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCGTCGCGCTACCGCTTCTTATTGTAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACGATTCCAGTTAACCAAATGGTTGATGTCGCAGGGA
AAAAAGATGAGCATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGTGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGCGGGATGACCAACCAGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTAGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCG
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGCTAGCGTTCCTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACCGGAATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATTACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTCGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAATTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484