Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   YB51_RS10070 Genome accession   NC_022516
Coordinates   2042689..2043453 (+) Length   254 a.a.
NCBI ID   WP_004194534.1    Uniprot ID   A0A126UJW8
Organism   Streptococcus suis YB51     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2037689..2048453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS10055 (YB51_10045) - 2040071..2040754 (-) 684 WP_004194526.1 YoaK family protein -
  YB51_RS10060 (YB51_10050) rlmH 2040779..2041258 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  YB51_RS10065 (YB51_10055) htrA 2041432..2042628 (+) 1197 WP_009911075.1 S1C family serine protease Regulator
  YB51_RS10070 (YB51_10060) spo0J 2042689..2043453 (+) 765 WP_004194534.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 254 a.a.        Molecular weight: 28993.28 Da        Isoelectric Point: 9.4760

>NTDB_id=62470 YB51_RS10070 WP_004194534.1 2042689..2043453(+) (spo0J) [Streptococcus suis YB51]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRINF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=62470 YB51_RS10070 WP_004194534.1 2042689..2043453(+) (spo0J) [Streptococcus suis YB51]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAACTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A126UJW8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.762

99.213

0.543


Multiple sequence alignment