Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LMZ02_RS02920 Genome accession   NZ_CP086393
Coordinates   651898..652857 (-) Length   319 a.a.
NCBI ID   WP_124332422.1    Uniprot ID   -
Organism   Paenibacillus macerans strain I6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 646898..657857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMZ02_RS02895 (LMZ02_02895) - 647223..647753 (+) 531 WP_155619327.1 RNA polymerase sigma factor -
  LMZ02_RS02900 (LMZ02_02900) - 647944..649050 (+) 1107 WP_240752171.1 serine hydrolase -
  LMZ02_RS02905 (LMZ02_02905) - 649097..650137 (-) 1041 WP_036619094.1 siderophore ABC transporter substrate-binding protein -
  LMZ02_RS02910 (LMZ02_02910) - 650203..650964 (-) 762 WP_036619092.1 ABC transporter ATP-binding protein -
  LMZ02_RS02915 (LMZ02_02915) - 650961..651914 (-) 954 WP_240752172.1 iron chelate uptake ABC transporter family permease subunit -
  LMZ02_RS02920 (LMZ02_02920) ceuB 651898..652857 (-) 960 WP_124332422.1 ABC transporter permease Machinery gene
  LMZ02_RS02925 (LMZ02_02925) - 653070..653198 (+) 129 WP_036619087.1 DUF4023 family protein -
  LMZ02_RS02930 (LMZ02_02930) - 653728..654054 (-) 327 WP_155619325.1 hypothetical protein -
  LMZ02_RS02935 (LMZ02_02935) - 654380..655042 (+) 663 WP_124332420.1 hypothetical protein -
  LMZ02_RS02940 (LMZ02_02940) - 655075..655257 (+) 183 WP_124332419.1 hypothetical protein -
  LMZ02_RS02945 (LMZ02_02945) - 655427..655603 (-) 177 WP_164815302.1 hypothetical protein -
  LMZ02_RS02950 (LMZ02_02950) - 655785..656294 (+) 510 WP_082207631.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34754.72 Da        Isoelectric Point: 9.9014

>NTDB_id=624693 LMZ02_RS02920 WP_124332422.1 651898..652857(-) (ceuB) [Paenibacillus macerans strain I6]
MKTRYLTAMLIVLSLVSLFIGVKGISLPGLLRLDAEQWEIFRISRIPRLVSIIIAGVSMSIVGLIMQQLTRNKFVSPTTA
GTMDSASFGIMISLLLFSAAGPLAKIAVAFVCSLAGTYIFMQILDRVKYKDTIFIPLVGLMFGGIVSSATTFFAYKYNLI
QSMSAWLHGDFSMIMQGRYELLYISVPLVAAAYGYANKFTVAGMGEEFSVGLGLNYKRVVNLGLMLVALVTSVVVLTVGS
IPFLGLIIPNLVTMYRGDNLKNNLPHTALLGAVFVLACDILGRVIIYPYEVSIGLTVGVIGSGIFLYLLMRRNAYEPKP

Nucleotide


Download         Length: 960 bp        

>NTDB_id=624693 LMZ02_RS02920 WP_124332422.1 651898..652857(-) (ceuB) [Paenibacillus macerans strain I6]
ATGAAAACAAGATATTTAACAGCAATGTTGATTGTCTTATCCCTGGTCTCCTTGTTTATCGGAGTCAAGGGCATCTCCCT
GCCGGGCCTGCTCCGTCTGGACGCCGAGCAGTGGGAGATTTTCCGCATTAGCCGGATTCCCCGGCTCGTCAGCATCATCA
TCGCCGGGGTCAGCATGAGCATCGTCGGGCTGATCATGCAGCAGTTGACCCGCAACAAATTCGTGTCCCCGACGACGGCG
GGCACGATGGATTCCGCCAGCTTCGGAATCATGATCTCGCTGCTGCTGTTTTCGGCGGCGGGGCCGCTGGCGAAAATCGC
CGTTGCCTTCGTCTGCTCGCTCGCGGGCACTTATATTTTTATGCAAATCCTGGATCGCGTGAAATATAAGGATACGATTT
TCATTCCGCTGGTCGGCTTGATGTTTGGCGGAATCGTCAGCTCGGCAACGACGTTTTTTGCCTATAAATACAATTTGATT
CAAAGCATGTCCGCCTGGCTGCACGGCGATTTCTCGATGATCATGCAGGGGCGTTACGAGCTGCTGTACATCAGCGTTCC
GCTGGTCGCGGCGGCTTATGGGTACGCTAACAAATTTACGGTCGCCGGGATGGGCGAGGAATTTTCCGTAGGTTTGGGGC
TGAATTACAAGCGGGTCGTCAATCTCGGTCTGATGCTGGTGGCGCTGGTGACTTCGGTCGTCGTGCTGACGGTAGGGTCG
ATCCCTTTTCTCGGGTTGATTATTCCGAACCTCGTTACGATGTACCGGGGCGATAACCTGAAAAACAATCTGCCCCACAC
GGCGTTGCTGGGGGCGGTCTTTGTGCTGGCTTGCGACATTTTGGGAAGGGTCATCATTTATCCGTATGAGGTTTCGATCG
GTCTAACCGTCGGGGTGATCGGGAGCGGCATCTTCCTGTATTTGCTGATGAGGAGAAACGCCTATGAGCCTAAGCCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.651

98.746

0.53