Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LM401_RS15135 Genome accession   NZ_CP086391
Coordinates   2629486..2630115 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1585m1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2624486..2635115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM401_RS15120 (LM401_15130) helD 2624728..2626782 (-) 2055 WP_001315388.1 DNA helicase IV -
  LM401_RS15125 (LM401_15135) yccF 2626905..2627351 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LM401_RS15130 (LM401_15140) yccS 2627361..2629523 (+) 2163 WP_000875044.1 YccS family putative transporter -
  LM401_RS15135 (LM401_15145) sxy/tfoX 2629486..2630115 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LM401_RS15140 (LM401_15150) sulA 2630334..2630843 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LM401_RS15145 (LM401_15155) ompA 2631200..2632252 (+) 1053 WP_000750419.1 porin OmpA -
  LM401_RS15150 (LM401_15160) matP 2632327..2632779 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LM401_RS15155 (LM401_15165) ycbZ 2632965..2634725 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=624678 LM401_RS15135 WP_000839153.1 2629486..2630115(-) (sxy/tfoX) [Escherichia coli strain 1585m1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=624678 LM401_RS15135 WP_000839153.1 2629486..2630115(-) (sxy/tfoX) [Escherichia coli strain 1585m1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1