Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LMT64_RS08085 Genome accession   NZ_CP086380
Coordinates   1598616..1598996 (-) Length   126 a.a.
NCBI ID   WP_126351145.1    Uniprot ID   -
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593616..1603996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS08070 (LMT64_08070) rlmB 1594469..1595188 (+) 720 WP_126351149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LMT64_RS08075 (LMT64_08075) - 1595582..1596298 (+) 717 Protein_1594 M20/M25/M40 family metallo-hydrolase -
  LMT64_RS08080 (LMT64_08080) comEC 1596370..1598616 (-) 2247 WP_126351146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LMT64_RS08085 (LMT64_08085) comEA 1598616..1598996 (-) 381 WP_126351145.1 helix-hairpin-helix domain-containing protein Machinery gene
  LMT64_RS08090 (LMT64_08090) - 1599094..1602186 (-) 3093 WP_170165911.1 ExeM/NucH family extracellular endonuclease -
  LMT64_RS08095 (LMT64_08095) fumC 1602469..1603863 (+) 1395 WP_126351144.1 class II fumarate hydratase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13210.27 Da        Isoelectric Point: 4.0236

>NTDB_id=624661 LMT64_RS08085 WP_126351145.1 1598616..1598996(-) (comEA) [Deinococcus radiophilus strain ATCC 27603]
MSGEGNERLWTAGLGAGLVLVGLLTLWPLLFAQPRAPQVMRQELPAVTMTDPAPEYPSTASVEPLISGQLNLNSATQEQL
EALPRIGPALAERIMAARPLGSLADLDAVSGIGPATLEELAPLVTF

Nucleotide


Download         Length: 381 bp        

>NTDB_id=624661 LMT64_RS08085 WP_126351145.1 1598616..1598996(-) (comEA) [Deinococcus radiophilus strain ATCC 27603]
ATGTCCGGTGAGGGAAACGAACGGCTCTGGACCGCTGGCCTGGGGGCCGGGTTGGTCTTGGTCGGTCTGCTGACGCTGTG
GCCACTGCTGTTCGCTCAGCCGCGTGCCCCCCAGGTCATGCGCCAGGAGCTGCCGGCTGTGACGATGACCGACCCGGCGC
CGGAGTATCCCAGCACGGCCAGCGTAGAACCACTGATCTCGGGACAATTGAATCTGAATTCGGCCACCCAGGAGCAGCTC
GAAGCCCTGCCGCGCATCGGTCCGGCGCTGGCGGAAAGGATCATGGCAGCGCGCCCACTGGGTTCCCTGGCGGATCTGGA
CGCGGTAAGTGGCATCGGTCCGGCCACGCTGGAAGAACTGGCTCCATTGGTGACGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.911

97.619

0.556