Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LMT64_RS08080 Genome accession   NZ_CP086380
Coordinates   1596370..1598616 (-) Length   748 a.a.
NCBI ID   WP_126351146.1    Uniprot ID   A0A3S0RJD0
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591370..1603616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS08065 (LMT64_08065) - 1591758..1594436 (+) 2679 WP_126351150.1 EAL domain-containing protein -
  LMT64_RS08070 (LMT64_08070) rlmB 1594469..1595188 (+) 720 WP_126351149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LMT64_RS08075 (LMT64_08075) - 1595582..1596298 (+) 717 Protein_1594 M20/M25/M40 family metallo-hydrolase -
  LMT64_RS08080 (LMT64_08080) comEC 1596370..1598616 (-) 2247 WP_126351146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LMT64_RS08085 (LMT64_08085) comEA 1598616..1598996 (-) 381 WP_126351145.1 helix-hairpin-helix domain-containing protein Machinery gene
  LMT64_RS08090 (LMT64_08090) - 1599094..1602186 (-) 3093 WP_170165911.1 ExeM/NucH family extracellular endonuclease -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 79361.29 Da        Isoelectric Point: 6.9152

>NTDB_id=624660 LMT64_RS08080 WP_126351146.1 1596370..1598616(-) (comEC) [Deinococcus radiophilus strain ATCC 27603]
MMERALGRHAAPFQSAQPAPRLPWPIYTALGVLGALLPALGYFWALALWPLVLAFAWYERRSWGGVAALIAGALAFGSLS
VVQARPDPLTPWHGAVVTLRGEWDGQFLTLHDPPARVVLSPRPAERRGEVSVRGRLLPPRERTVPGGFDQAAWLRSQGGL
VALAPSAVLVGAEVRGAGEASGVKSRTQGWFERGWAGLSPEAEALLIGLELGDRSGLNELESQDGGSVRDDFTRAGLAHL
LALSGQHVTLLVGALSLLLLRLPLPPATRFLLPAAFLVFYLAGLVQVSPSVTRAVLMGMVVAVALAFGRGRPEPLGLLAL
IATVTLLAFPLWVLTPGFQLSFLAVAGLALVPGVMARLPQDWTRPGWRQYLTGGVAVTLLAQAATLPLVAGSFGVIPLAG
LPANLLAAPLMTLLVPLGFLAGLLGPLGTVLTWPLEALAQVLLNLAHWFGRWPVLPWGAVGPGGYAAFALSALAGVAWLR
GWIRPPVALGTWLLCALLTALPSRLDPPRQLVFLDVGQGDSTLIQAPGLRVLVDGGGTPHGDYDLSRTVIPALRSLGVSA
LDVVVATHSDTDHIEGLVGVLRELPVGELWIGQRDPDNELLAELLAMAEERGIPVREVRRGDYVQAGGVRLDILWPEGHF
WSTEPNENSVALGITAGEFRAALLGDLPAPLEHSLGLGRLDLLKAAHHGSRHSTSATLLTQTAPADAVISVGYNTFRHPS
DEVLTRLDAAGVRVWRTDQQGSVIWPLP

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=624660 LMT64_RS08080 WP_126351146.1 1596370..1598616(-) (comEC) [Deinococcus radiophilus strain ATCC 27603]
ATGATGGAGCGGGCGTTGGGTCGCCACGCGGCTCCCTTCCAGTCAGCACAACCTGCGCCTCGCCTGCCCTGGCCCATCTA
CACCGCGCTGGGTGTCCTAGGCGCGCTGCTGCCCGCCTTGGGTTACTTCTGGGCACTGGCCCTGTGGCCTCTGGTCCTGG
CGTTCGCCTGGTATGAGCGGCGTTCGTGGGGCGGGGTAGCCGCCCTGATTGCCGGAGCACTGGCCTTTGGTTCGCTGAGT
GTGGTGCAGGCCCGACCTGATCCGCTCACCCCTTGGCACGGCGCGGTGGTCACGCTGAGAGGCGAGTGGGATGGCCAGTT
TCTCACCCTGCACGATCCTCCCGCGCGGGTGGTTCTCTCGCCGCGTCCCGCCGAGCGCCGGGGAGAGGTGAGCGTGCGTG
GACGGCTGCTGCCTCCGCGTGAGCGCACCGTGCCGGGCGGTTTTGACCAGGCGGCCTGGCTGCGCTCGCAAGGCGGGCTG
GTTGCCCTGGCTCCCAGCGCCGTGCTGGTCGGCGCCGAGGTGCGCGGAGCCGGAGAGGCCAGCGGGGTCAAAAGCCGCAC
CCAGGGTTGGTTTGAGCGCGGCTGGGCGGGCCTGAGTCCTGAAGCGGAGGCGCTGCTGATTGGTCTGGAACTGGGCGACC
GTTCTGGCCTGAACGAGCTGGAATCGCAGGACGGCGGGAGTGTGCGGGATGATTTTACCCGCGCCGGGCTGGCACACCTG
CTGGCGCTGAGTGGTCAACACGTCACGCTGCTGGTCGGCGCGTTGTCGCTGCTCCTGCTCAGATTGCCGCTGCCCCCGGC
CACCCGCTTTTTGCTGCCCGCGGCCTTTCTGGTGTTTTATCTGGCGGGGCTGGTGCAGGTATCACCGTCCGTCACCCGCG
CCGTACTGATGGGGATGGTGGTCGCGGTGGCGCTGGCGTTTGGAAGGGGCCGACCGGAACCACTGGGCCTGCTGGCGCTG
ATCGCCACAGTCACGCTGCTGGCCTTTCCGCTCTGGGTGCTGACGCCTGGATTTCAGCTGTCGTTTCTGGCAGTGGCGGG
GCTGGCACTGGTGCCTGGGGTCATGGCCCGGCTGCCGCAAGATTGGACCCGTCCCGGCTGGCGGCAATATCTGACGGGTG
GCGTCGCTGTCACCTTGTTGGCGCAGGCGGCCACCCTCCCGCTTGTGGCGGGCAGTTTCGGGGTGATTCCCCTGGCCGGG
CTGCCCGCCAACCTATTGGCCGCCCCGCTGATGACCCTGCTGGTTCCACTGGGCTTTCTGGCTGGGTTACTGGGGCCACT
GGGTACCGTGTTGACCTGGCCGTTGGAAGCCCTGGCCCAAGTCTTGTTGAACCTGGCCCACTGGTTCGGGCGCTGGCCAG
TGCTGCCCTGGGGCGCAGTGGGGCCAGGGGGCTACGCCGCTTTTGCCCTAAGTGCGCTGGCCGGGGTGGCCTGGCTGCGT
GGGTGGATTCGTCCCCCAGTGGCGCTGGGAACCTGGCTGCTTTGTGCCCTCCTCACCGCTTTGCCGTCCAGATTGGACCC
GCCGCGTCAACTGGTCTTTCTGGATGTGGGGCAGGGCGACAGCACGCTGATTCAGGCTCCGGGCCTGCGGGTGCTGGTAG
ACGGTGGCGGCACTCCGCACGGCGACTATGATCTCAGCCGTACGGTCATTCCGGCGCTGCGCTCGCTGGGTGTCTCGGCA
CTGGATGTGGTGGTGGCGACCCACTCCGACACCGACCATATCGAGGGGCTGGTGGGTGTACTGCGTGAGCTGCCGGTGGG
GGAGCTGTGGATCGGACAGCGTGACCCGGACAACGAGCTGTTGGCCGAGCTGCTCGCAATGGCTGAAGAACGTGGTATTC
CAGTCCGCGAGGTCCGGCGGGGTGATTATGTTCAGGCCGGCGGTGTGCGTCTGGATATCTTATGGCCTGAAGGCCACTTC
TGGAGCACCGAACCGAATGAGAACAGCGTGGCTCTCGGCATTACAGCTGGCGAGTTCCGCGCTGCGCTGCTGGGCGACCT
GCCCGCTCCGTTGGAACACAGCCTGGGTCTGGGCCGACTGGATCTTCTCAAGGCCGCGCATCATGGTAGTCGCCACAGCA
CCTCAGCAACCCTGCTGACCCAAACGGCTCCAGCCGACGCTGTCATCTCGGTGGGCTACAACACCTTCCGCCATCCAAGT
GATGAGGTGCTGACCCGGTTAGATGCCGCCGGGGTACGCGTCTGGCGCACCGACCAGCAGGGCAGTGTGATCTGGCCGCT
GCCCTGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(227-480)

Metallo-beta-lactamase superfamily (Lactamase_B)

(515-709)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.267

98.128

0.552