Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   LMT64_RS06620 Genome accession   NZ_CP086380
Coordinates   1318320..1318913 (-) Length   197 a.a.
NCBI ID   WP_126351450.1    Uniprot ID   A0A3S0IQ64
Organism   Deinococcus radiophilus strain ATCC 27603     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313320..1323913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMT64_RS06600 (LMT64_06600) metK 1314474..1315685 (+) 1212 WP_126351446.1 methionine adenosyltransferase -
  LMT64_RS06605 (LMT64_06605) - 1315800..1316348 (+) 549 WP_126351447.1 phosphoribosyltransferase family protein -
  LMT64_RS06610 (LMT64_06610) - 1316377..1317321 (+) 945 WP_229253090.1 hypothetical protein -
  LMT64_RS06615 (LMT64_06615) - 1317363..1318301 (+) 939 WP_126351449.1 hypothetical protein -
  LMT64_RS06620 (LMT64_06620) ddrB 1318320..1318913 (-) 594 WP_126351450.1 single-stranded DNA-binding protein Machinery gene
  LMT64_RS06625 (LMT64_06625) - 1319046..1319699 (-) 654 WP_126351451.1 DUF2270 domain-containing protein -
  LMT64_RS06630 (LMT64_06630) - 1319752..1320402 (-) 651 WP_126351452.1 MBL fold metallo-hydrolase -
  LMT64_RS06635 (LMT64_06635) - 1320521..1321207 (-) 687 WP_324295856.1 MBL fold metallo-hydrolase -
  LMT64_RS06640 (LMT64_06640) - 1321200..1322150 (-) 951 WP_126351453.1 DNA polymerase III -
  LMT64_RS06645 (LMT64_06645) - 1322224..1322676 (-) 453 WP_126351454.1 hypothetical protein -
  LMT64_RS06650 (LMT64_06650) - 1322720..1323481 (+) 762 WP_126351455.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21911.56 Da        Isoelectric Point: 6.9950

>NTDB_id=624658 LMT64_RS06620 WP_126351450.1 1318320..1318913(-) (ddrB) [Deinococcus radiophilus strain ATCC 27603]
MLHIEFITDLGAKVTVDVERPEQLLDVQRHYGRLGWTSGEVPNGGFVFPLDNEPDFDWSLIGARPWTNPEGEVMILHRGH
AYRRRELEAVDSRKLKLPKAVKYSRGAKPTDPEHLREKADGEIEYVTLAMFRGGKRQDRFAASQGQGTSAGQGQPREPRA
AAPAGRYEPRPQPDSVPMSRPTARAAASAPAEEDTPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=624658 LMT64_RS06620 WP_126351450.1 1318320..1318913(-) (ddrB) [Deinococcus radiophilus strain ATCC 27603]
ATGTTGCACATTGAATTCATCACCGATCTGGGGGCCAAAGTCACGGTGGACGTGGAGCGGCCTGAGCAGCTGCTGGACGT
GCAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGGTGCCCAACGGCGGCTTCGTATTTCCGCTGGACAATGAAC
CTGACTTCGACTGGTCGCTTATCGGTGCCCGGCCCTGGACCAACCCAGAAGGCGAAGTGATGATCCTGCACCGCGGTCAC
GCCTACCGCCGACGCGAGCTGGAAGCAGTGGACAGCCGCAAGCTGAAACTGCCCAAGGCCGTCAAGTACAGCCGTGGTGC
CAAGCCCACCGACCCCGAACACCTGCGCGAAAAGGCCGATGGAGAGATCGAATACGTGACCCTGGCCATGTTCCGGGGCG
GAAAGCGTCAGGACCGTTTCGCCGCTTCGCAGGGCCAGGGCACCTCAGCCGGTCAGGGTCAGCCGCGCGAACCCCGCGCT
GCCGCCCCCGCTGGCCGCTACGAGCCACGCCCTCAGCCCGACAGTGTGCCTATGTCGCGCCCCACGGCCCGCGCCGCCGC
TTCAGCCCCAGCCGAAGAAGACACTCCTTTTTGA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(3-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0IQ64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

72.561

83.249

0.604