Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LMA04_RS10125 Genome accession   NZ_CP086374
Coordinates   2085729..2087162 (+) Length   477 a.a.
NCBI ID   WP_268109243.1    Uniprot ID   -
Organism   Pseudescherichia vulneris strain KY109     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080729..2092162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMA04_RS10095 (LMA04_10085) - 2081309..2082274 (+) 966 WP_268109239.1 calcium/sodium antiporter -
  LMA04_RS10100 (LMA04_10090) kdsD 2082288..2083274 (+) 987 WP_103821355.1 arabinose-5-phosphate isomerase KdsD -
  LMA04_RS10105 (LMA04_10095) kdsC 2083288..2083854 (+) 567 WP_268109240.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LMA04_RS10110 (LMA04_10100) lptC 2083851..2084426 (+) 576 WP_103821357.1 LPS export ABC transporter periplasmic protein LptC -
  LMA04_RS10115 (LMA04_10105) lptA 2084395..2084949 (+) 555 WP_268109241.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LMA04_RS10120 (LMA04_10110) lptB 2084956..2085681 (+) 726 WP_268109242.1 LPS export ABC transporter ATP-binding protein -
  LMA04_RS10125 (LMA04_10115) rpoN/rpoN1 2085729..2087162 (+) 1434 WP_268109243.1 RNA polymerase factor sigma-54 Machinery gene
  LMA04_RS10130 (LMA04_10120) hpf 2087185..2087472 (+) 288 WP_103821361.1 ribosome hibernation promoting factor -
  LMA04_RS10135 (LMA04_10125) ptsN 2087555..2088046 (+) 492 WP_268109244.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LMA04_RS10140 (LMA04_10130) rapZ 2088092..2088946 (+) 855 WP_042390071.1 RNase adapter RapZ -
  LMA04_RS10145 (LMA04_10135) npr 2088943..2089215 (+) 273 WP_103821363.1 PTS phosphocarrier protein NPr -
  LMA04_RS10150 (LMA04_10140) yrbL 2089406..2090002 (+) 597 WP_327077064.1 PhoP regulatory network protein YrbL -
  LMA04_RS10155 (LMA04_10145) mtgA 2089977..2090705 (-) 729 WP_268109245.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LMA04_RS10160 (LMA04_10150) elbB 2090705..2091355 (-) 651 WP_268109246.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53610.35 Da        Isoelectric Point: 4.4330

>NTDB_id=624629 LMA04_RS10125 WP_268109243.1 2085729..2087162(+) (rpoN/rpoN1) [Pseudescherichia vulneris strain KY109]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQSQDTEALDSADALEQKDMPE
ELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVSLED
ILDSMGDSNVGLDEVEAVLKRVQRFDPVGVAARDLRDCLLIQLSQFASDTPWRAEAKLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNADSIPRLQINQHYAAMCSGTRNDADSQYIR
SNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDKGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=624629 LMA04_RS10125 WP_268109243.1 2085729..2087162(+) (rpoN/rpoN1) [Pseudescherichia vulneris strain KY109]
ATGAAGCAAGGTTTGCAACTACGGCTAAGCCAACAGCTCGCCATGACGCCCCAACTGCAACAGGCTATTCGTCTGTTGCA
GCTCTCGACGCTGGAACTTCAGCAAGAACTTCAGCAGGCGCTGGATAGCAACCCGCTGCTGGAGCAAACCGATCTTCACG
ACGAGGTAGACGCCCAGCAGTCTCAGGACACCGAAGCGTTAGACTCCGCCGACGCCCTTGAGCAGAAAGATATGCCCGAG
GAGCTGCCGCTGGATGCCAGCTGGGATGAGATCTACACCGCCGGTACGCCATCTGGCAACGGCGTGGACTATCAGGACGA
TGAGCTTCCCGTCTACCAGGGCGAAACCACCCAGTCGCTGCAGGACTACCTGATGTGGCAGGTGGAGCTGACGCCCTTCT
CCGATACCGATCGCGCTATTGCGACCTCCATTGTCGACGCCGTGGATGAGACCGGCTACCTGACCGTCTCGCTGGAAGAT
ATCCTCGACAGCATGGGCGACAGCAACGTGGGTCTGGATGAGGTCGAGGCGGTACTGAAACGCGTCCAGCGTTTCGATCC
GGTGGGCGTGGCGGCACGGGATCTGCGCGACTGCCTGCTGATCCAGCTCTCCCAGTTCGCCAGCGATACCCCGTGGCGGG
CCGAAGCCAAACTGATCATCAGCGATCACCTCGATCTGCTGGCAAACCACGATTTCCGCACCCTAATGCGCGTGACCCGC
CTGAAGGAAGAGGTGCTGAAAGAGGCGGTGAATCTGATCCAGTCCCTGGATCCGCGCCCCGGCCAGTCGATCCAGACCGG
TGAGCCGGAGTATGTGATCCCCGACGTGCTGGTACGCAAGCATAATGGCCGCTGGACGGTAGAGCTGAACGCTGACAGCA
TTCCGCGCCTGCAGATTAACCAGCACTACGCTGCCATGTGCAGCGGCACGCGCAACGATGCCGACAGCCAGTATATCCGC
AGCAATCTTCAGGAAGCCAAATGGCTGATTAAGAGCCTGGAGAGCCGCAACGATACCCTGTTGCGCGTCAGCCGCTGCAT
CGTGGAACAGCAGCAGGCCTTTTTCGACAAAGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGATATTGCCCAGGCCG
TCGAGATGCATGAATCCACCATTTCACGCGTGACAACCCAGAAATACCTGCACAGCCCGAGGGGCATTTTTGAGCTTAAA
TACTTTTTCTCCAGCCACGTGAATACCGAAGGCGGCGGCGAAGCCTCTTCTACGGCTATTCGCGCGCTGGTGAAGAAGCT
GATAGCCGCAGAAAACCCTGCGAAACCACTGAGCGACAGTAAACTGACCACCCTGCTGTCCGACCAGGGTATCATGGTGG
CGCGCCGTACCGTTGCGAAGTATCGAGAGTCTTTATCCATCCCGCCGTCTAACCAGCGCAAGCAGCTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.635

100

0.482