Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMA04_RS04915 Genome accession   NZ_CP086374
Coordinates   973677..974306 (-) Length   209 a.a.
NCBI ID   WP_268108474.1    Uniprot ID   -
Organism   Pseudescherichia vulneris strain KY109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 968677..979306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMA04_RS04900 (LMA04_04890) helD 968918..970972 (-) 2055 WP_268108471.1 DNA helicase IV -
  LMA04_RS04905 (LMA04_04895) - 971096..971539 (+) 444 WP_268108472.1 YccF domain-containing protein -
  LMA04_RS04910 (LMA04_04900) yccS 971560..973692 (+) 2133 WP_268108473.1 YccS family putative transporter -
  LMA04_RS04915 (LMA04_04905) sxy/tfoX 973677..974306 (-) 630 WP_268108474.1 TfoX/Sxy family DNA transformation protein Regulator
  LMA04_RS04920 (LMA04_04910) sulA 974524..975033 (+) 510 WP_103819608.1 SOS-induced cell division inhibitor SulA -
  LMA04_RS04925 (LMA04_04915) ompA 975388..976446 (+) 1059 WP_268108475.1 porin OmpA -
  LMA04_RS04930 (LMA04_04920) matP 976515..976967 (-) 453 WP_268108476.1 macrodomain Ter protein MatP -
  LMA04_RS04935 (LMA04_04925) - 977153..978913 (+) 1761 WP_268108477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23890.53 Da        Isoelectric Point: 9.2637

>NTDB_id=624626 LMA04_RS04915 WP_268108474.1 973677..974306(-) (sxy/tfoX) [Pseudescherichia vulneris strain KY109]
MKNVSYQRIYQSREYLSPLGHIHHRALFGGYSLAIEDTVFAMVAEGALYLRACEESAPYYTNAKAPLLTFVKRGRPVLLN
YFRVDDGLWQDRETLLTLCQYSLAAAQREKIARRAQKRLRDLPNLNFQLETLLWEAGVKDEPGLKQLGAKACWLRLKERS
PQLSIKVLFALEGAITGLHEAALPAETRRELTVWFKELEAESSLHQRGT

Nucleotide


Download         Length: 630 bp        

>NTDB_id=624626 LMA04_RS04915 WP_268108474.1 973677..974306(-) (sxy/tfoX) [Pseudescherichia vulneris strain KY109]
ATGAAAAACGTATCGTATCAAAGGATCTATCAATCTCGGGAATATCTTTCGCCGCTGGGGCATATCCATCACCGTGCGCT
CTTTGGTGGTTACAGTCTCGCCATTGAGGATACGGTGTTTGCGATGGTGGCCGAAGGGGCGCTCTACCTGCGTGCCTGTG
AGGAGAGCGCACCCTACTATACGAATGCGAAAGCCCCCTTACTGACTTTTGTGAAGCGGGGGAGGCCCGTCCTGCTGAAC
TACTTCCGGGTCGATGATGGCCTATGGCAGGATCGCGAAACGCTGCTGACCCTCTGCCAATACTCGCTGGCGGCCGCGCA
GCGGGAAAAGATCGCGAGGCGTGCGCAGAAGCGGCTCAGGGATCTTCCCAATCTGAACTTCCAGCTGGAGACCCTGCTCT
GGGAAGCGGGCGTCAAAGATGAGCCCGGCCTCAAACAGCTTGGGGCGAAGGCGTGCTGGCTCAGGTTAAAGGAGCGCAGC
CCGCAGCTGAGTATCAAAGTGCTGTTTGCTCTTGAAGGGGCTATCACGGGGCTGCATGAGGCGGCACTCCCGGCAGAGAC
GCGCCGGGAGCTAACCGTCTGGTTTAAAGAGCTGGAGGCGGAGAGCAGTTTACATCAGCGGGGAACCTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.04

94.737

0.512