Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   YB51_RS08410 Genome accession   NC_022516
Coordinates   1702726..1703460 (-) Length   244 a.a.
NCBI ID   WP_002939204.1    Uniprot ID   A0A0K2E869
Organism   Streptococcus suis YB51     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697726..1708460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YB51_RS08380 (YB51_8380) rnpM 1697954..1698250 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  YB51_RS08385 (YB51_8385) nusA 1698267..1699409 (-) 1143 WP_013730553.1 transcription termination factor NusA -
  YB51_RS08390 (YB51_8390) rimP 1699482..1699952 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  YB51_RS08395 (YB51_8395) trmB 1700210..1700848 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  YB51_RS08400 (YB51_8400) ccrZ 1700845..1701639 (-) 795 WP_013730554.1 cell cycle regulator CcrZ -
  YB51_RS08405 (YB51_8405) - 1701689..1702729 (-) 1041 WP_013730555.1 ABC transporter permease -
  YB51_RS08410 (YB51_8410) pptA 1702726..1703460 (-) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  YB51_RS08415 (YB51_8415) - 1703523..1703936 (+) 414 WP_002939203.1 HIT family protein -
  YB51_RS08420 (YB51_8420) - 1703938..1704240 (+) 303 WP_002939199.1 hypothetical protein -
  YB51_RS08425 (YB51_8425) - 1704349..1705542 (-) 1194 WP_002939198.1 LCP family protein -
  YB51_RS08430 (YB51_8430) - 1705539..1706066 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  YB51_RS08435 (YB51_8435) tsaE 1706059..1706499 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  YB51_RS08440 (YB51_8440) - 1706600..1708266 (-) 1667 Protein_1627 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26760.04 Da        Isoelectric Point: 4.3999

>NTDB_id=62462 YB51_RS08410 WP_002939204.1 1702726..1703460(-) (pptA) [Streptococcus suis YB51]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=62462 YB51_RS08410 WP_002939204.1 1702726..1703460(-) (pptA) [Streptococcus suis YB51]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACCCCCT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTATTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2E869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment