Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LMH85_RS21000 Genome accession   NZ_CP086373
Coordinates   4868855..4869808 (-) Length   317 a.a.
NCBI ID   WP_019688644.1    Uniprot ID   A0A378Y424
Organism   Paenibacillus polymyxa strain MEZ6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4863855..4874808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH85_RS20975 (LMH85_20965) - 4864324..4865235 (-) 912 WP_025365861.1 aldo/keto reductase -
  LMH85_RS20980 (LMH85_20970) - 4865394..4866137 (-) 744 WP_025365862.1 alpha/beta hydrolase -
  LMH85_RS20985 (LMH85_20975) - 4866170..4867150 (-) 981 WP_031462258.1 siderophore ABC transporter substrate-binding protein -
  LMH85_RS20990 (LMH85_20980) - 4867163..4867921 (-) 759 WP_025365864.1 ABC transporter ATP-binding protein -
  LMH85_RS20995 (LMH85_20985) - 4867915..4868865 (-) 951 WP_025365865.1 iron chelate uptake ABC transporter family permease subunit -
  LMH85_RS21000 (LMH85_20990) ceuB 4868855..4869808 (-) 954 WP_019688644.1 ABC transporter permease Machinery gene
  LMH85_RS21005 (LMH85_20995) - 4870132..4870809 (+) 678 WP_025365866.1 response regulator transcription factor -
  LMH85_RS21010 (LMH85_21000) - 4870810..4871727 (+) 918 WP_117290010.1 sensor histidine kinase -
  LMH85_RS21015 (LMH85_21005) - 4871835..4872512 (+) 678 WP_025365868.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.67 Da        Isoelectric Point: 9.9012

>NTDB_id=624617 LMH85_RS21000 WP_019688644.1 4868855..4869808(-) (ceuB) [Paenibacillus polymyxa strain MEZ6]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=624617 LMH85_RS21000 WP_019688644.1 4868855..4869808(-) (ceuB) [Paenibacillus polymyxa strain MEZ6]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATTTGCGGGCTCATCATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTCATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAACCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCAGCCAATTTGGGCG
TACATTACAAGCGCACTGTCAATGTTGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACTGTCGGGACG
ATTCCCTTTTTGGGACTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCGTGTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAGATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378Y424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498