Detailed information NTG0624565

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: KT882_RS19580
• Genome accession: NZ_CP086370
• Coordinates: 4391159..4393639 (-)
• Length: 826 a.a.
• NCBI ID: WP_228896717.1
• Uniprot ID: -
• Organism: Pseudoduganella aquatica strain HC52
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4386159..4398639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KT882_RS30670	-	4386559..4386900 (-)	342	WP_267478619.1	FlxA-like family protein	-
KT882_RS19550	-	4386995..4387576 (-)	582	WP_161074187.1	YSC84-related protein	-
KT882_RS19555	dcd	4387671..4388237 (-)	567	WP_161074188.1	dCTP deaminase	-
KT882_RS19560	-	4388355..4388597 (-)	243	WP_321170368.1	type II toxin-antitoxin system RelE/ParE family toxin	-
KT882_RS19565	-	4388906..4389736 (-)	831	WP_228893096.1	alpha/beta fold hydrolase	-
KT882_RS19570	-	4389807..4389965 (-)	159	WP_228893097.1	hypothetical protein	-
KT882_RS19575	-	4390045..4391028 (-)	984	WP_228893098.1	proline iminopeptidase-family hydrolase	-
KT882_RS19580	comA	4391159..4393639 (-)	2481	WP_228896717.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
KT882_RS19585	-	4393835..4394155 (+)	321	WP_228893099.1	hypothetical protein	-
KT882_RS19590	-	4394222..4395025 (-)	804	WP_228893100.1	TatD family hydrolase	-
KT882_RS19595	lolD	4395028..4395717 (-)	690	WP_228893101.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
KT882_RS19600	-	4395710..4396987 (-)	1278	WP_228893102.1	lipoprotein-releasing ABC transporter permease subunit	-
KT882_RS19605	-	4396995..4398269 (-)	1275	WP_161074197.1	lipoprotein-releasing ABC transporter permease subunit	-

Sequence

Protein

• Length: 826 a.a.
• Molecular weight: 88889.42 Da
• Isoelectric Point: 10.0822

>NTDB_id=624565 KT882_RS19580 WP_228896717.1 4391159..4393639(-) (comA) [Pseudoduganella aquatica strain HC52]
MRCAILGFVGGAAWLQMLAALPTYPSAGLAAAVAAALALPAARRWLPARVSWLRHFLAVLAGAAAGFFWAVLLAEAALAP
ELSKADEGRDITLIGTIANLPNRFEGGVRFNFAVEQVERGAARVPPLVALSWYEGYRGEAVPIGEVQPGERWRLTVRLQR
PHGNANPYGFDYELWLLEQGVRATGYVRQDGRNQRLATFVGSFGNVIEHCRAVLRERILRALKGKEYAGVIVALVVGDQR
GIPQSDWLVFNRTGISHLISISGLHITMIAGLFALAASALWRRSFFTRAQLPLLLPAQKVAALAGMLAALVYVLLAGFGV
PAQRTLYMLAVVAVALWTDRLASVTHVLCLAAGVVVLLDPWAVMWPGFWLSFGAVATILYATVGRTEVHHGSGVAVLAAG
AAGNGALPLLQPRRAPLSRRERWMADLKMAARVQYAVTVGLVPLTMLLFAQVSVASPVANAVAIPVVSLLVTPLALAGAV
LPDLLAAPLLNLAHGTVWLLAQALQWMSASRFAVWAAPTPPPWLFCWALFGTAWMLAPRGWPLRWLGIVTWLPLLAATPS
HPADGAFRVTAFDVGQGMALLVETSGHRLLYDTGPAYAPDSNGGNRVILPYLRARGIGALDAMVVSHADADHSGGALAML
ENMRISWTSTSLPAGHPIVRASPRHVRCEAGQGWNWDGVLFEMLHPSAESYGHAGLKPNARSCVLRVSAGGKAMLLAGDI
EAAQEAELLLRAPASLPADVLLAPHHGSGTSSTPPFLAAVRPGAAIFQVGYRNRYHHPQPQVFERYRSLGIDRLRTDESG
ALTLEFNGQLSVERYREANPRYWRHP

Nucleotide

• Length: 2481 bp

>NTDB_id=624565 KT882_RS19580 WP_228896717.1 4391159..4393639(-) (comA) [Pseudoduganella aquatica strain HC52]
ATGAGATGCGCGATACTCGGCTTTGTTGGCGGCGCGGCGTGGCTGCAAATGCTGGCCGCGTTGCCTACATACCCATCAGC
CGGGCTGGCAGCGGCGGTTGCTGCGGCTCTGGCCTTGCCTGCGGCGCGGCGCTGGCTTCCTGCCCGGGTAAGCTGGCTGC
GCCATTTTCTTGCCGTACTGGCCGGCGCAGCTGCCGGCTTCTTCTGGGCCGTATTATTGGCGGAAGCGGCACTGGCGCCC
GAGCTGTCGAAGGCTGATGAGGGCCGCGACATTACGCTGATCGGCACCATCGCCAACCTGCCCAACCGTTTCGAAGGCGG
CGTCCGTTTCAATTTCGCGGTGGAGCAAGTCGAACGCGGCGCGGCGCGCGTGCCGCCGCTGGTCGCGTTGTCCTGGTACG
AGGGCTATCGCGGCGAGGCCGTGCCGATAGGCGAAGTGCAGCCGGGCGAACGCTGGCGGCTCACGGTCCGCTTGCAGCGG
CCGCACGGCAACGCCAATCCCTATGGCTTCGATTATGAACTTTGGCTGTTGGAGCAGGGCGTGCGCGCCACCGGATATGT
GCGCCAGGATGGCCGCAACCAGCGCCTGGCTACTTTTGTCGGCAGCTTTGGCAATGTGATTGAACACTGCCGCGCCGTGC
TGCGGGAGCGCATTCTGCGCGCGCTCAAGGGCAAGGAATATGCGGGCGTGATCGTGGCTCTGGTGGTGGGAGACCAACGT
GGCATTCCGCAATCGGACTGGCTGGTGTTCAACCGCACGGGCATCAGCCACTTAATCAGTATCTCCGGTTTACACATTAC
GATGATCGCCGGCCTGTTCGCGCTGGCCGCGTCGGCCTTGTGGCGGCGATCCTTCTTCACGCGCGCGCAGTTGCCGCTGC
TGCTGCCTGCGCAGAAAGTGGCGGCGCTGGCTGGCATGCTGGCGGCGCTGGTGTACGTGCTGCTAGCGGGCTTCGGCGTG
CCAGCTCAGCGCACGCTGTATATGCTGGCGGTGGTCGCCGTGGCGCTGTGGACGGACCGGCTGGCCAGCGTGACGCATGT
GCTGTGCCTTGCTGCCGGCGTAGTGGTGCTGCTGGATCCCTGGGCGGTGATGTGGCCGGGTTTCTGGCTTTCGTTCGGCG
CCGTCGCCACCATCCTCTACGCGACGGTGGGCCGCACCGAGGTGCATCACGGCAGCGGCGTGGCGGTGCTGGCGGCAGGC
GCCGCCGGTAATGGCGCGCTGCCGCTGCTGCAGCCGCGCCGCGCGCCGCTGTCGAGGCGCGAACGGTGGATGGCGGACTT
AAAGATGGCCGCACGCGTGCAGTACGCGGTCACCGTCGGTCTGGTGCCGCTGACCATGCTGCTGTTCGCGCAGGTGTCGG
TGGCAAGTCCGGTGGCAAATGCGGTGGCCATTCCGGTAGTCAGCCTGCTGGTCACGCCGCTGGCGTTGGCGGGGGCGGTG
CTGCCGGATTTGCTGGCCGCGCCATTGCTGAACCTTGCGCACGGAACCGTATGGCTGCTGGCGCAAGCGCTGCAATGGAT
GAGCGCGAGCCGCTTCGCCGTATGGGCCGCGCCCACGCCGCCGCCCTGGCTGTTCTGCTGGGCGCTGTTCGGCACGGCGT
GGATGCTGGCGCCGCGCGGCTGGCCCTTGCGCTGGCTGGGTATCGTGACCTGGCTGCCCTTGCTGGCGGCGACGCCCAGC
CATCCGGCGGACGGCGCATTCCGCGTGACCGCCTTCGACGTGGGGCAGGGCATGGCGCTGCTGGTGGAAACCAGTGGGCA
TCGCCTGCTGTACGACACCGGCCCCGCCTACGCGCCTGATTCCAATGGCGGCAACCGGGTGATCCTGCCTTACCTGCGGG
CGCGCGGCATCGGCGCGCTGGATGCGATGGTGGTGAGCCACGCGGACGCCGACCACTCCGGCGGCGCCCTGGCGATGCTG
GAAAATATGCGCATCTCCTGGACCAGCACCTCGCTGCCGGCGGGGCATCCCATCGTGCGCGCCTCGCCCAGGCATGTGCG
CTGCGAAGCCGGGCAGGGCTGGAACTGGGACGGGGTGCTCTTTGAGATGCTGCATCCCTCCGCCGAAAGCTACGGCCATG
CGGGACTGAAACCGAACGCCCGCAGCTGCGTGCTGAGGGTGAGCGCGGGCGGCAAGGCCATGCTGCTGGCAGGCGACATC
GAAGCGGCACAGGAGGCCGAGCTGCTGCTACGCGCCCCGGCGAGCCTGCCGGCCGATGTGCTGCTCGCTCCACACCACGG
CAGCGGCACGTCGTCCACGCCGCCATTCCTGGCTGCCGTGCGGCCTGGCGCTGCCATATTCCAGGTCGGCTACCGCAACC
GCTATCACCATCCCCAGCCGCAGGTCTTTGAGCGCTACCGCAGCCTTGGTATCGATCGCCTGCGCACCGACGAAAGCGGA
GCACTGACGCTGGAGTTCAATGGCCAGCTCAGCGTGGAGCGCTACCGCGAAGCCAACCCGCGCTATTGGCGCCATCCGTA
A

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (574-763)

• Domain of unknown function (DUF4131) (DUF4131) (26-190)

• Competence protein (Competence) (234-539)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	47.203	100	0.49