Detailed information NTG0624515

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LMF30_RS04645
• Genome accession: NZ_CP086368
• Coordinates: 933564..934667 (-)
• Length: 367 a.a.
• NCBI ID: WP_023853086.1
• Uniprot ID: A0AAI9J0F0
• Organism: Bordetella pertussis CS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 928564..939667

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMF30_RS04615 (LMF30_04620)	-	928602..929552 (+)	951	WP_005013747.1	IS481-like element IS481 family transposase	-
LMF30_RS04620 (LMF30_04625)	-	929546..930031 (+)	486	Protein_906	ATP-binding cassette domain-containing protein	-
LMF30_RS04625 (LMF30_04630)	phnE	930028..930918 (+)	891	WP_033446133.1	phosphonate ABC transporter, permease protein PhnE	-
LMF30_RS04630 (LMF30_04635)	phnE	930915..931736 (+)	822	WP_010931496.1	phosphonate ABC transporter, permease protein PhnE	-
LMF30_RS04640 (LMF30_04645)	-	931919..933517 (+)	1599	Protein_909	CYTH and CHAD domain-containing protein	-
LMF30_RS04645 (LMF30_04650)	pilA	933564..934667 (-)	1104	WP_023853086.1	signal recognition particle-docking protein FtsY	Machinery gene
LMF30_RS04650 (LMF30_04655)	rsmD	934743..935363 (+)	621	WP_003808577.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LMF30_RS04655 (LMF30_04660)	coaD	935384..935893 (+)	510	WP_003808574.1	pantetheine-phosphate adenylyltransferase	-
LMF30_RS04660 (LMF30_04665)	-	935948..936199 (+)	252	WP_003808570.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LMF30_RS04665 (LMF30_04670)	-	936263..937396 (+)	1134	WP_010931494.1	benzoate/H(+) symporter BenE family transporter	-
LMF30_RS04670 (LMF30_04675)	-	937404..937790 (-)	387	WP_003808567.1	MOSC N-terminal beta barrel domain-containing protein	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 38499.02 Da
• Isoelectric Point: 6.5148

>NTDB_id=624515 LMF30_RS04645 WP_023853086.1 933564..934667(-) (pilA) [Bordetella pertussis CS]
MFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSRTG
QNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRA
QPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGR
ARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTA
KGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD

Nucleotide

• Length: 1104 bp

>NTDB_id=624515 LMF30_RS04645 WP_023853086.1 933564..934667(-) (pilA) [Bordetella pertussis CS]
ATGTTCAGCTTCTTCAAGAAAAAATCCCCTCCGCCCGCCGCGCCGGCCCAGCCCGCGCCGCCGCCGGAGGCAGTGGACGC
AGGGTCAGCCGCACCTGCGCAGCCTCAACCCGCCGAGCCGCAGCCCGAGCCGCAGCCGCAACAACCGCCCGAGCCGCAGC
CACCGGTCGCGGCCGCGCCCGAGGCGCCCCGCAAGGCCTCGTGGCTGAGCCGGCTCAAACAGGGCCTGTCGCGCACCGGC
CAGAACATCGGCGGGCTGTTCGTCGGCGTGAAGGTCGACGAGAACCTGTTCGAGGAACTGGAGTCGGCGCTGATCATGGC
CGACGCGGGCATCGAGGCCACCGAGAAACTGCTGGCCGCGCTGCGCGCGCGCGTCAAGAAAGAGCGCATCGACGATCCGG
CGCAGGTCAAGACGGCGCTGCGCCAATTGCTGGCCGACCATCTGCGGCCGCTGGAGCGGTCCTTCGACCTGGGGCGGGCC
CAGCCCCTGGTGGTCATGATCGCCGGCGTCAACGGCGCGGGCAAGACGACCTCGATCGGCAAGCTGGCGCATACCTTCCA
GCGCCAGGGCGCCAGCGTGCTGCTGGCGGCCGGGGACACCTTCCGCGCGGCGGCGCGCGAGCAATTGGTCGAATGGGGCA
GCCGCAACAATGTGACCGTGATCTCGCAGGATGGCGGCGATCCGGCCGCGGTGGCGTTCGACTCGGTCAATGCCGGACGT
GCGCGCAACGTGGGCGTGGTGATGGTGGATACGGCCGGCCGCCTGCCCACGCAGCTGCACCTGATGGAAGAATTGAAGAA
GATCCGCCGCGTCATCGGCAAGGCCGAGGCCAGCGCGCCGCATGAAGTGCTGCTGGTGGTCGATGGCAACACCGGCCAGA
ACGCGCTGGCGCAAATCCGCGCCTTCGACGCCGCCATCACCCTCACCGGCCTGGTCGTCACCAAGCTGGACGGCACCGCC
AAGGGCGGCACGCTGGCGGCCGTGGCCGCCGGCAGCCAGGGCGTGCGGCCCATCCCGGTCTATTGGATCGGCGTGGGCGA
GGGGTTGGAGGACCTGCAGCCCTTCGTGGCCGACGAGTTCGCCGCCGCCCTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (163-365)

• SRP54-type protein, helical bundle domain (SRP54_N) (83-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.913	94.005	0.507