Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5N09_RS07760 Genome accession   NZ_CP086338
Coordinates   1637134..1637763 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EJN001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632134..1642763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5N09_RS07740 (C5N09_007750) ycbZ 1632535..1634295 (-) 1761 WP_000152888.1 AAA family ATPase -
  C5N09_RS07745 (C5N09_007755) matP 1634481..1634933 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C5N09_RS07750 (C5N09_007760) ompA 1635009..1636049 (-) 1041 WP_000750416.1 porin OmpA -
  C5N09_RS07755 (C5N09_007765) sulA 1636406..1636915 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5N09_RS07760 (C5N09_007770) sxy/tfoX 1637134..1637763 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5N09_RS07765 (C5N09_007775) yccS 1637726..1639888 (-) 2163 WP_000875058.1 YccS family putative transporter -
  C5N09_RS07770 (C5N09_007780) yccF 1639898..1640344 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C5N09_RS07775 (C5N09_007785) helD 1640467..1642521 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=624415 C5N09_RS07760 WP_000839153.1 1637134..1637763(+) (sxy/tfoX) [Escherichia coli strain EJN001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=624415 C5N09_RS07760 WP_000839153.1 1637134..1637763(+) (sxy/tfoX) [Escherichia coli strain EJN001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1