Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5N12_RS07065 Genome accession   NZ_CP086334
Coordinates   1368756..1369385 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EBJ003     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1363756..1374385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5N12_RS07050 (C5N12_007065) helD 1363998..1366052 (-) 2055 WP_020232990.1 DNA helicase IV -
  C5N12_RS07055 (C5N12_007070) yccF 1366175..1366621 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C5N12_RS07060 (C5N12_007075) yccS 1366631..1368793 (+) 2163 WP_000875041.1 YccS family putative transporter -
  C5N12_RS07065 (C5N12_007080) sxy/tfoX 1368756..1369385 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5N12_RS07070 (C5N12_007085) sulA 1369604..1370113 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5N12_RS07075 (C5N12_007090) ompA 1370470..1371522 (+) 1053 WP_000750418.1 porin OmpA -
  C5N12_RS07080 (C5N12_007095) matP 1371597..1372049 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C5N12_RS07085 (C5N12_007100) ycbZ 1372235..1373995 (+) 1761 WP_000156476.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=624369 C5N12_RS07065 WP_000839153.1 1368756..1369385(-) (sxy/tfoX) [Escherichia coli strain EBJ003]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=624369 C5N12_RS07065 WP_000839153.1 1368756..1369385(-) (sxy/tfoX) [Escherichia coli strain EBJ003]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1