Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LMD38_RS26255 Genome accession   NZ_CP086328
Coordinates   5090719..5091846 (-) Length   375 a.a.
NCBI ID   WP_000470750.1    Uniprot ID   A0A2C3GXQ0
Organism   Bacillus pacificus strain anQ-h4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5085719..5096846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS26245 (LMD38_26245) gyrA 5086198..5088669 (-) 2472 WP_001282851.1 DNA gyrase subunit A -
  LMD38_RS26250 (LMD38_26250) gyrB 5088758..5090680 (-) 1923 WP_000435991.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LMD38_RS26255 (LMD38_26255) recF 5090719..5091846 (-) 1128 WP_000470750.1 DNA replication/repair protein RecF Machinery gene
  LMD38_RS26260 (LMD38_26260) yaaA 5091859..5092071 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  LMD38_RS26265 (LMD38_26265) dnaN 5092199..5093338 (-) 1140 WP_001212895.1 DNA polymerase III subunit beta -
  LMD38_RS26270 (LMD38_26270) dnaA 5093518..5094858 (-) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  LMD38_RS26275 (LMD38_26275) rpmH 5095424..5095558 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  LMD38_RS26280 (LMD38_26280) rnpA 5095635..5095982 (+) 348 WP_000726627.1 ribonuclease P protein component -
  LMD38_RS26285 (LMD38_26285) spoIIIJ 5096035..5096802 (+) 768 WP_000726761.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43334.66 Da        Isoelectric Point: 6.7809

>NTDB_id=624331 LMD38_RS26255 WP_000470750.1 5090719..5091846(-) (recF) [Bacillus pacificus strain anQ-h4]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=624331 LMD38_RS26255 WP_000470750.1 5090719..5091846(-) (recF) [Bacillus pacificus strain anQ-h4]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAGAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGCTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAACTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTAAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATTTTGCAAAAACGCTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGGTTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCCGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAAGAATATCCGATTCTTCTATTAGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C3GXQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651