Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LMD38_RS26055 Genome accession   NZ_CP086328
Coordinates   5054175..5054459 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus pacificus strain anQ-h4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5049175..5059459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS26040 (LMD38_26040) rnmV 5049971..5050528 (-) 558 WP_000692830.1 ribonuclease M5 -
  LMD38_RS26045 (LMD38_26045) - 5050742..5051509 (-) 768 WP_061183155.1 TatD family hydrolase -
  LMD38_RS26050 (LMD38_26050) metG 5051675..5053657 (-) 1983 WP_000159677.1 methionine--tRNA ligase -
  LMD38_RS26055 (LMD38_26055) abrB 5054175..5054459 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LMD38_RS26060 (LMD38_26060) rsmI 5054480..5055355 (-) 876 WP_000267806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LMD38_RS26065 (LMD38_26065) - 5055324..5055614 (-) 291 WP_000414339.1 GIY-YIG nuclease family protein -
  LMD38_RS26070 (LMD38_26070) - 5055601..5056341 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LMD38_RS26075 (LMD38_26075) yabA 5056462..5056812 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  LMD38_RS26080 (LMD38_26080) - 5056827..5057654 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  LMD38_RS26085 (LMD38_26085) holB 5057660..5058643 (-) 984 WP_000169574.1 DNA polymerase III subunit delta' -
  LMD38_RS26090 (LMD38_26090) tmk 5058679..5059305 (-) 627 WP_000677230.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=624329 LMD38_RS26055 WP_000843036.1 5054175..5054459(+) (abrB) [Bacillus pacificus strain anQ-h4]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=624329 LMD38_RS26055 WP_000843036.1 5054175..5054459(+) (abrB) [Bacillus pacificus strain anQ-h4]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCGATTGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851