Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   LMD38_RS20435 Genome accession   NZ_CP086328
Coordinates   3931242..3931925 (-) Length   227 a.a.
NCBI ID   WP_000350722.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3926242..3936925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS20420 (LMD38_20420) pepF 3926423..3928249 (-) 1827 WP_000003391.1 oligoendopeptidase F Regulator
  LMD38_RS20425 (LMD38_20425) - 3928300..3929544 (-) 1245 WP_062822684.1 competence protein CoiA -
  LMD38_RS20430 (LMD38_20430) - 3929625..3931169 (-) 1545 WP_000799204.1 cardiolipin synthase -
  LMD38_RS20435 (LMD38_20435) mecA 3931242..3931925 (-) 684 WP_000350722.1 adaptor protein MecA Regulator
  LMD38_RS20440 (LMD38_20440) - 3932265..3932939 (+) 675 WP_000362602.1 TerC family protein -
  LMD38_RS20445 (LMD38_20445) spx 3932989..3933384 (-) 396 WP_000258267.1 transcriptional regulator Spx -
  LMD38_RS20450 (LMD38_20450) - 3933977..3934180 (+) 204 WP_000559976.1 hypothetical protein -
  LMD38_RS20455 (LMD38_20455) - 3934209..3935855 (-) 1647 WP_000728614.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26951.98 Da        Isoelectric Point: 3.9822

>NTDB_id=624315 LMD38_RS20435 WP_000350722.1 3931242..3931925(-) (mecA) [Bacillus pacificus strain anQ-h4]
MDIERINDHTMKFFITYIDIEDRGFNREEIWYDRERSEELFWEMMDEARDHDDFFIDGPLWIQVQAVDKGIEVLVTKAEL
SKDGQKLELPIGVDKIIDIPLDEGIESLFQQEVVEEVEEQAGTNFNEDGTFGFLIKFNDFEDVISLSHRLIFEDIKDELY
SFEDRYYVYVEFDEVLHDEEEIDRILSIVLEYGEESTLTIHRVSEYGKQIVKEHALETIRNNFPAKT

Nucleotide


Download         Length: 684 bp        

>NTDB_id=624315 LMD38_RS20435 WP_000350722.1 3931242..3931925(-) (mecA) [Bacillus pacificus strain anQ-h4]
TTGGATATTGAAAGAATTAATGATCATACGATGAAATTTTTTATTACGTACATTGATATAGAGGACAGAGGCTTTAATCG
TGAGGAAATTTGGTATGACCGCGAAAGAAGCGAAGAGCTCTTTTGGGAAATGATGGACGAAGCTCGTGATCATGACGATT
TCTTTATTGATGGGCCGTTATGGATTCAAGTGCAAGCAGTCGATAAAGGGATTGAAGTACTTGTAACGAAAGCAGAACTT
TCAAAGGATGGACAAAAGCTAGAACTACCAATAGGTGTAGATAAAATTATAGACATTCCTCTAGATGAAGGTATTGAATC
ATTATTCCAGCAAGAAGTAGTGGAAGAGGTAGAAGAACAAGCAGGTACAAACTTTAACGAAGATGGTACGTTTGGCTTTT
TAATTAAGTTTAATGATTTTGAAGATGTCATTTCATTAAGCCACCGTCTTATCTTTGAAGATATAAAAGATGAGCTGTAT
TCATTTGAGGACCGCTATTATGTATATGTGGAATTCGATGAAGTGCTACATGATGAAGAAGAAATTGATCGCATTTTAAG
CATTGTTTTAGAATACGGGGAAGAATCAACTTTAACAATTCATCGTGTAAGTGAGTATGGGAAACAAATTGTGAAAGAGC
ATGCGCTTGAAACAATTCGCAATAATTTTCCTGCTAAAACGTAG

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Bacillus subtilis subsp. subtilis str. 168

56.14

100

0.564