Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LMD38_RS19950 Genome accession   NZ_CP086328
Coordinates   3838390..3838713 (+) Length   107 a.a.
NCBI ID   WP_033678331.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3833390..3843713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS19930 (LMD38_19930) inhA1 3833776..3835053 (-) 1278 Protein_3975 M6 family metalloprotease immune inhibitor InhA1 -
  LMD38_RS19935 (LMD38_19935) - 3835146..3836582 (+) 1437 WP_001053964.1 IS4 family transposase -
  LMD38_RS19940 (LMD38_19940) inhA1 3836710..3837834 (-) 1125 Protein_3977 M6 family metalloprotease immune inhibitor InhA1 -
  LMD38_RS19945 (LMD38_19945) - 3838176..3838310 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  LMD38_RS19950 (LMD38_19950) sinR 3838390..3838713 (+) 324 WP_033678331.1 helix-turn-helix domain-containing protein Regulator
  LMD38_RS19955 (LMD38_19955) calY 3838804..3839397 (-) 594 WP_016716924.1 biofilm matrix protein CalY -
  LMD38_RS19960 (LMD38_19960) - 3839694..3840500 (-) 807 WP_228919934.1 DUF4047 domain-containing protein -
  LMD38_RS19965 (LMD38_19965) - 3840636..3841223 (-) 588 WP_061183634.1 CalY family protein -
  LMD38_RS19970 (LMD38_19970) sipW 3841286..3841855 (-) 570 WP_062821872.1 signal peptidase I SipW -
  LMD38_RS19975 (LMD38_19975) - 3842049..3843335 (-) 1287 WP_061183636.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12396.21 Da        Isoelectric Point: 8.5938

>NTDB_id=624313 LMD38_RS19950 WP_033678331.1 3838390..3838713(+) (sinR) [Bacillus pacificus strain anQ-h4]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTRENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=624313 LMD38_RS19950 WP_033678331.1 3838390..3838713(+) (sinR) [Bacillus pacificus strain anQ-h4]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAGGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692