Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LMD38_RS16625 Genome accession   NZ_CP086328
Coordinates   3176909..3177196 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus pacificus strain anQ-h4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171909..3182196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS16605 (LMD38_16605) - 3172304..3173164 (+) 861 WP_016717252.1 AraC family transcriptional regulator -
  LMD38_RS16610 (LMD38_16610) - 3173233..3174096 (+) 864 WP_227585351.1 CdaR family transcriptional regulator -
  LMD38_RS16615 (LMD38_16615) - 3174332..3175435 (+) 1104 WP_016717250.1 ABC transporter ATP-binding protein -
  LMD38_RS16620 (LMD38_16620) - 3175646..3176596 (-) 951 WP_001089044.1 serine protease -
  LMD38_RS16625 (LMD38_16625) abrB 3176909..3177196 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LMD38_RS16630 (LMD38_16630) - 3177313..3179193 (-) 1881 WP_016717249.1 FtsX-like permease family protein -
  LMD38_RS16635 (LMD38_16635) nadE 3179465..3180283 (+) 819 WP_000174882.1 ammonia-dependent NAD(+) synthetase -
  LMD38_RS16640 (LMD38_16640) - 3180332..3180793 (-) 462 WP_014893814.1 NUDIX hydrolase -
  LMD38_RS16645 (LMD38_16645) - 3180825..3181022 (-) 198 WP_014893815.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=624310 LMD38_RS16625 WP_000648331.1 3176909..3177196(-) (abrB) [Bacillus pacificus strain anQ-h4]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=624310 LMD38_RS16625 WP_000648331.1 3176909..3177196(-) (abrB) [Bacillus pacificus strain anQ-h4]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516