Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LMD38_RS07130 Genome accession   NZ_CP086328
Coordinates   1342452..1342910 (-) Length   152 a.a.
NCBI ID   WP_000804868.1    Uniprot ID   A0A0J1HZV6
Organism   Bacillus pacificus strain anQ-h4     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337452..1347910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS07105 (LMD38_07105) - 1337684..1339225 (-) 1542 WP_061183943.1 MDR family MFS transporter -
  LMD38_RS07110 (LMD38_07110) - 1339650..1340150 (+) 501 WP_000708167.1 hypothetical protein -
  LMD38_RS28805 (LMD38_07115) - 1340090..1340323 (-) 234 WP_041184695.1 hypothetical protein -
  LMD38_RS07120 (LMD38_07120) - 1340486..1341127 (+) 642 WP_000680842.1 diguanylate cyclase domain-containing protein -
  LMD38_RS07125 (LMD38_07125) - 1341758..1342420 (+) 663 WP_000922491.1 YkyA family protein -
  LMD38_RS07130 (LMD38_07130) kre 1342452..1342910 (-) 459 WP_000804868.1 YkyB family protein Regulator
  LMD38_RS07135 (LMD38_07135) ppx 1343088..1344626 (+) 1539 WP_000658869.1 exopolyphosphatase -
  LMD38_RS07140 (LMD38_07140) - 1344734..1346842 (+) 2109 WP_014893533.1 polyphosphate kinase -
  LMD38_RS07145 (LMD38_07145) - 1347002..1347238 (-) 237 WP_000283744.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17787.52 Da        Isoelectric Point: 10.6793

>NTDB_id=624304 LMD38_RS07130 WP_000804868.1 1342452..1342910(-) (kre) [Bacillus pacificus strain anQ-h4]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=624304 LMD38_RS07130 WP_000804868.1 1342452..1342910(-) (kre) [Bacillus pacificus strain anQ-h4]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAGTATTTATACTGGTTAAAAAAGACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1HZV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493