Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LMD38_RS06125 Genome accession   NZ_CP086328
Coordinates   1162393..1163187 (+) Length   264 a.a.
NCBI ID   WP_061129473.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1157393..1168187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS06110 (LMD38_06110) argR 1158232..1158681 (+) 450 WP_001032581.1 arginine repressor ArgR -
  LMD38_RS06115 (LMD38_06115) recN 1158949..1160688 (+) 1740 WP_000947753.1 DNA repair protein RecN Machinery gene
  LMD38_RS06120 (LMD38_06120) spoIVB 1160807..1162105 (+) 1299 WP_062821985.1 SpoIVB peptidase -
  LMD38_RS06125 (LMD38_06125) spo0A 1162393..1163187 (+) 795 WP_061129473.1 sporulation transcription factor Spo0A Regulator
  LMD38_RS06130 (LMD38_06130) - 1163353..1164324 (+) 972 WP_061129449.1 tyrosine-type recombinase/integrase -
  LMD38_RS06135 (LMD38_06135) - 1165306..1165926 (+) 621 WP_061129450.1 hypothetical protein -
  LMD38_RS06140 (LMD38_06140) - 1166075..1166437 (+) 363 WP_228920231.1 GIY-YIG nuclease family protein -
  LMD38_RS06145 (LMD38_06145) - 1167018..1167791 (+) 774 WP_061129452.1 hypothetical protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29436.17 Da        Isoelectric Point: 7.4719

>NTDB_id=624302 LMD38_RS06125 WP_061129473.1 1162393..1163187(+) (spo0A) [Bacillus pacificus strain anQ-h4]
MEKIKVCLVDDNKELVSMLESYVAAQEDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIALVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=624302 LMD38_RS06125 WP_061129473.1 1162393..1163187(+) (spo0A) [Bacillus pacificus strain anQ-h4]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
GGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TATTAGATATTATTATGCCACATTTAGATGGGTTAGCTGTACTAGAGAAAATGCGCCATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCGTTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCGTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCAAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGTGCAATCC
GTCACGCAATTGAGGTAGCATGGAGTCGCGGGAATATCGATTCTATTTCGTCCTTATTCGGTTATACAGTATCTATGTCA
AAAGCAAAACCTACGAACTCCGAGTTCATCGCACTGGTTGCGGATAAGCTTAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818