Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LMD38_RS05765 Genome accession   NZ_CP086328
Coordinates   1108711..1109754 (+) Length   347 a.a.
NCBI ID   WP_001013195.1    Uniprot ID   A0AAP5FWA8
Organism   Bacillus pacificus strain anQ-h4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103711..1114754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS05730 (LMD38_05730) - 1103965..1104453 (+) 489 WP_061184068.1 hypothetical protein -
  LMD38_RS05735 (LMD38_05735) - 1104490..1104801 (-) 312 WP_061184067.1 hypothetical protein -
  LMD38_RS05740 (LMD38_05740) - 1105055..1105270 (+) 216 WP_001008330.1 DUF3912 family protein -
  LMD38_RS05745 (LMD38_05745) - 1105358..1105765 (+) 408 WP_062821281.1 hypothetical protein -
  LMD38_RS05750 (LMD38_05750) - 1105940..1107334 (-) 1395 WP_001094339.1 L-cystine transporter -
  LMD38_RS05755 (LMD38_05755) - 1107442..1107684 (-) 243 WP_000440713.1 DUF2626 domain-containing protein -
  LMD38_RS05760 (LMD38_05760) - 1107810..1108505 (-) 696 WP_000434106.1 metalloregulator ArsR/SmtB family transcription factor -
  LMD38_RS05765 (LMD38_05765) comGA 1108711..1109754 (+) 1044 WP_001013195.1 competence protein ComGA Machinery gene
  LMD38_RS05770 (LMD38_05770) comGB 1109747..1110778 (+) 1032 WP_016718476.1 competence type IV pilus assembly protein ComGB -
  LMD38_RS05775 (LMD38_05775) comGC 1110790..1111089 (+) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  LMD38_RS05780 (LMD38_05780) comGD 1111086..1111541 (+) 456 WP_000810388.1 comG operon protein ComGD -
  LMD38_RS05785 (LMD38_05785) comGE 1111534..1111836 (+) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  LMD38_RS05790 (LMD38_05790) comGF 1111806..1112276 (+) 471 WP_000923056.1 competence type IV pilus minor pilin ComGF -
  LMD38_RS05795 (LMD38_05795) comGG 1112273..1112644 (+) 372 WP_062821301.1 competence type IV pilus minor pilin ComGG -
  LMD38_RS05800 (LMD38_05800) - 1112820..1113470 (+) 651 WP_000183848.1 2OG-Fe(II) oxygenase -
  LMD38_RS05805 (LMD38_05805) aroK 1113589..1114086 (+) 498 WP_000836625.1 shikimate kinase AroK -
  LMD38_RS05810 (LMD38_05810) - 1114125..1114325 (+) 201 WP_000106079.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39359.83 Da        Isoelectric Point: 9.0210

>NTDB_id=624300 LMD38_RS05765 WP_001013195.1 1108711..1109754(+) (comGA) [Bacillus pacificus strain anQ-h4]
MNGIESFANMILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
IQIDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=624300 LMD38_RS05765 WP_001013195.1 1108711..1109754(+) (comGA) [Bacillus pacificus strain anQ-h4]
ATGAATGGAATTGAAAGCTTTGCGAATATGATTTTAAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGGCAGAAGGATGTAGTGGTTCAACTGCGCATAGGAAAGGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGAGAGAGGCGGAAACCACAAAACGGTTCATTATAT
ATACAAATAGATGGACAAGAAGTGTATTTACGCCTTTCCACGCTTCCAACCGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCGTCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGATTACTCGTCTTTACGGGACCGACTGGTTCAGGAAAGACAACAACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCGTTACGCTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTCATGGATTTTGGTATAACGAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGCAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGCTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.925

100

0.579
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366