Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LMD38_RS05500 Genome accession   NZ_CP086328
Coordinates   1056415..1057161 (+) Length   248 a.a.
NCBI ID   WP_062821269.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1051415..1062161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS05470 (LMD38_05470) - 1051704..1053848 (+) 2145 WP_016718495.1 HD family phosphohydrolase -
  LMD38_RS05475 (LMD38_05475) ybeY 1053845..1054315 (+) 471 WP_000054691.1 rRNA maturation RNase YbeY -
  LMD38_RS05480 (LMD38_05480) - 1054312..1054665 (+) 354 WP_000715476.1 diacylglycerol kinase family protein -
  LMD38_RS05485 (LMD38_05485) - 1054765..1055163 (+) 399 WP_001086296.1 cytidine deaminase -
  LMD38_RS05490 (LMD38_05490) era 1055156..1056061 (+) 906 WP_001080241.1 GTPase Era -
  LMD38_RS05495 (LMD38_05495) - 1056238..1056381 (+) 144 WP_000883924.1 YqzL family protein -
  LMD38_RS05500 (LMD38_05500) recO 1056415..1057161 (+) 747 WP_062821269.1 DNA repair protein RecO Machinery gene
  LMD38_RS05505 (LMD38_05505) - 1057269..1057901 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  LMD38_RS05510 (LMD38_05510) - 1057931..1058743 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  LMD38_RS05515 (LMD38_05515) dnaG 1059595..1061391 (+) 1797 WP_000528214.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28646.18 Da        Isoelectric Point: 7.7708

>NTDB_id=624299 LMD38_RS05500 WP_062821269.1 1056415..1057161(+) (recO) [Bacillus pacificus strain anQ-h4]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYHIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=624299 LMD38_RS05500 WP_062821269.1 1056415..1057161(+) (recO) [Bacillus pacificus strain anQ-h4]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCATATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGTA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548