Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LMD38_RS00930 Genome accession   NZ_CP086328
Coordinates   208064..209413 (+) Length   449 a.a.
NCBI ID   WP_227585649.1    Uniprot ID   -
Organism   Bacillus pacificus strain anQ-h4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 203064..214413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMD38_RS00910 (LMD38_00910) - 204169..204804 (-) 636 WP_016718930.1 YigZ family protein -
  LMD38_RS00915 (LMD38_00915) - 205044..205886 (+) 843 WP_000844764.1 DegV family protein -
  LMD38_RS00920 (LMD38_00920) - 206060..206374 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  LMD38_RS00925 (LMD38_00925) - 206521..207936 (+) 1416 WP_228920141.1 NlpC/P60 family protein -
  LMD38_RS00930 (LMD38_00930) comFA 208064..209413 (+) 1350 WP_227585649.1 ATP-dependent helicase ComFA Machinery gene
  LMD38_RS00935 (LMD38_00935) - 209413..210117 (+) 705 WP_061184244.1 ComF family protein -
  LMD38_RS00940 (LMD38_00940) cspC 210244..210441 (+) 198 WP_001162041.1 cold shock protein CspC -
  LMD38_RS00945 (LMD38_00945) hpf 210763..211305 (+) 543 WP_000671190.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LMD38_RS00950 (LMD38_00950) - 211628..212110 (+) 483 WP_073530387.1 hypothetical protein -
  LMD38_RS00955 (LMD38_00955) - 212228..212797 (+) 570 WP_228920143.1 hypothetical protein -
  LMD38_RS00960 (LMD38_00960) - 212829..213617 (+) 789 WP_227585651.1 hypothetical protein -
  LMD38_RS00965 (LMD38_00965) - 213604..214299 (+) 696 WP_061184246.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51025.70 Da        Isoelectric Point: 9.8372

>NTDB_id=624289 LMD38_RS00930 WP_227585649.1 208064..209413(+) (comFA) [Bacillus pacificus strain anQ-h4]
MLAGKQLLLEELSSDLRRELSDLKKKGEVVCVQGITKKASKYICQRCGNIEQRLFASFLCKRCGKACAYCRKCITMGRVS
ECTVLVRGIAERTGECHKKRLHWKGTLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEVLQKGERVCIAT
PRTDVVLELAPRLQEVFPSITVAALYGGSVDHKKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRKGKQKGVIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMHLNKKYPIFL
FVPHVQYIEEISQLLKGLDNRIDGVHAEDSMRKEKVASFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=624289 LMD38_RS00930 WP_227585649.1 208064..209413(+) (comFA) [Bacillus pacificus strain anQ-h4]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGGTTGTATGTGTACAAGGTATAACGAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCGGTAAAGCATGCGCGTATTGCCGGAAGTGTATCACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGCGGGATTGCTGAAAGAACAGGAGAGTGTCATAAAAAACGGTTACATTGGAAAGGGACTTT
ATCTACTGGTCAGGAGTTGGCGGCGCAAGGAGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGTGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCGCCGAGATTACAAGAAGTGTTTCCGAGTATAACTGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATAAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCAATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAAACAAAA
AGGTGTTATTGTGTCAGGACGATACCATCGTCACCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGCACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCAATATATAGAAGAAATAAGTCAGTTGTTGAAAGGGTTGGATAATAGAATCGATGGCGTGCATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCATCTTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGAGCGGGGCGTAGTTTTGAAGAGCCATACGGAGAGGTTATGTATTTTCATTACGGTAAGACAGAGGC
AATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAATGCGAAAGAACAAGGGTTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(311-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.632

93.096

0.49
  comFA Latilactobacillus sakei subsp. sakei 23K

39.756

91.314

0.363