Detailed information    

insolico Bioinformatically predicted

Overview


Name   braS   Type   Regulator
Locus tag   SA40_RS13090 Genome accession   NC_022443
Coordinates   2620484..2621371 (-) Length   295 a.a.
NCBI ID   WP_000143422.1    Uniprot ID   A0AB73JC73
Organism   Staphylococcus aureus subsp. aureus SA40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2615484..2626371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA40_RS13055 - 2615493..2615585 (+) 93 WP_010956583.1 hypothetical protein -
  SA40_RS13060 (SA40_2376) - 2615693..2616190 (-) 498 WP_001065268.1 glutathione peroxidase -
  SA40_RS13065 - 2616200..2616460 (-) 261 WP_011382405.1 hypothetical protein -
  SA40_RS13070 - 2616842..2616955 (-) 114 WP_078065157.1 hypothetical protein -
  SA40_RS13080 (SA40_2378) - 2617624..2619624 (-) 2001 WP_000776726.1 ABC transporter permease -
  SA40_RS13085 (SA40_2379) - 2619621..2620376 (-) 756 WP_000923775.1 ABC transporter ATP-binding protein -
  SA40_RS13090 (SA40_2380) braS 2620484..2621371 (-) 888 WP_000143422.1 nisin susceptibility-associated two-component system sensor histidine kinase NsaS Regulator
  SA40_RS13095 (SA40_2381) braR 2621382..2622047 (-) 666 WP_000697884.1 nisin susceptibility-associated two-component system response regulator NsaR Regulator
  SA40_RS13100 (SA40_2382) - 2622073..2622254 (-) 182 Protein_2482 hypothetical protein -
  SA40_RS13110 (SA40_2383) - 2622452..2623876 (+) 1425 WP_000953738.1 alkaline phosphatase -
  SA40_RS14560 - 2623946..2624056 (+) 111 WP_001791296.1 hypothetical protein -
  SA40_RS13115 (SA40_2384) - 2624159..2624614 (-) 456 WP_000106183.1 MarR family winged helix-turn-helix transcriptional regulator -
  SA40_RS13120 (SA40_2385) - 2624859..2625620 (-) 762 WP_000323448.1 alpha/beta hydrolase family protein -

Sequence


Protein


Download         Length: 295 a.a.        Molecular weight: 34031.29 Da        Isoelectric Point: 5.8962

>NTDB_id=62418 SA40_RS13090 WP_000143422.1 2620484..2621371(-) (braS) [Staphylococcus aureus subsp. aureus SA40]
MTFLKSITQEIAIVIVIFALFGLMFYLYHLPLEAYLLALGVILLLLLIFIGIKYLSFVKTISQQQQIENLENALYQLKNE
QIEYKNDVESYFLTWVHQMKTPITAAQLLLERDEPNVVNRVRQEVIQIDNYTSLALSYLKLLNETSDISVTKISINNIIR
PIIMKYSIQFIDQKTKIHYEPCHHEVLTDVRWTSLMIEQLINNALKYARGKDIWIEFDEQSNQLYVKDNGVGISEADLPK
IFDKGYSGYNGQRQSNSSGIGLFIVKQISTHTNHPVSVVSKQNEGTTFTIQFPDE

Nucleotide


Download         Length: 888 bp        

>NTDB_id=62418 SA40_RS13090 WP_000143422.1 2620484..2621371(-) (braS) [Staphylococcus aureus subsp. aureus SA40]
ATGACCTTTCTTAAAAGTATTACTCAGGAAATAGCAATAGTCATAGTTATTTTTGCTTTATTTGGCTTAATGTTTTACCT
GTATCATTTGCCATTAGAAGCATATTTACTAGCACTTGGCGTTATTTTATTATTATTACTCATATTCATAGGTATTAAAT
ATTTAAGTTTTGTAAAAACTATAAGCCAACAACAACAAATTGAAAACTTAGAAAATGCGTTGTATCAGCTTAAAAATGAA
CAAATTGAATATAAAAATGATGTAGAGAGCTACTTTTTAACATGGGTACATCAAATGAAAACACCCATTACTGCAGCACA
ACTGTTACTTGAAAGAGATGAGCCTAATGTTGTGAATCGTGTTCGTCAAGAGGTTATTCAAATTGATAACTATACAAGTT
TAGCACTTAGTTATTTAAAGTTATTAAATGAAACTTCTGATATTTCTGTCACTAAAATTTCGATTAACAATATCATTCGC
CCAATTATTATGAAATATTCAATACAGTTTATTGATCAAAAAACAAAAATCCATTATGAACCTTGTCATCACGAAGTATT
AACTGACGTTAGATGGACCTCTTTAATGATAGAACAATTAATAAATAATGCACTTAAGTATGCGAGAGGTAAAGATATAT
GGATTGAATTTGATGAGCAATCCAATCAATTATACGTAAAAGATAATGGTGTTGGTATTAGTGAAGCGGACTTGCCTAAA
ATATTTGATAAGGGCTATTCAGGTTATAATGGCCAGCGCCAAAGTAACTCAAGTGGGATTGGTTTATTTATCGTAAAACA
AATTTCAACTCACACAAACCATCCTGTTTCAGTCGTATCTAAACAAAATGAGGGTACAACATTTACGATTCAATTTCCAG
ATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

98.983

100

0.99


Multiple sequence alignment