Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LL004_RS16255 Genome accession   NZ_CP086285
Coordinates   3261655..3262251 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain Kp1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256655..3267251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL004_RS16240 helD 3256863..3258917 (-) 2055 WP_020324408.1 DNA helicase IV -
  LL004_RS16245 - 3259042..3259488 (+) 447 WP_002898425.1 YccF domain-containing protein -
  LL004_RS16250 yccS 3259506..3261641 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LL004_RS16255 sxy/tfoX 3261655..3262251 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  LL004_RS16260 sulA 3262600..3263109 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LL004_RS16265 ompA 3263462..3264532 (+) 1071 WP_002898408.1 porin OmpA -
  LL004_RS16270 matP 3264664..3265116 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LL004_RS16275 - 3265302..3267059 (+) 1758 WP_002898401.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=624142 LL004_RS16255 WP_004150836.1 3261655..3262251(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=624142 LL004_RS16255 WP_004150836.1 3261655..3262251(-) (sxy/tfoX) [Klebsiella pneumoniae strain Kp1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51