Detailed information NTG0624115

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LGV81_RS06125
• Genome accession: NZ_CP086265
• Coordinates: 1234535..1237078 (+)
• Length: 847 a.a.
• NCBI ID: WP_173940789.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RS647
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1210608..1237078	1234535..1237078	within	0

Gene organization within MGE regions

Location: 1210608..1237078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LGV81_RS05980 (LGV81_05985)	purU	1210608..1211480 (-)	873	WP_011001056.1	formyltetrahydrofolate deformylase	-
LGV81_RS05985 (LGV81_05990)	-	1212059..1212295 (+)	237	Protein_1183	glycine/betaine ABC transporter permease	-
LGV81_RS05990 (LGV81_05995)	-	1212291..1213120 (+)	830	Protein_1184	GlxA family transcriptional regulator	-
LGV81_RS05995 (LGV81_06000)	-	1213175..1213319 (+)	145	Protein_1185	S-(hydroxymethyl)glutathione dehydrogenase	-
LGV81_RS06005 (LGV81_06010)	-	1213698..1214618 (-)	921	WP_020831607.1	LysR family transcriptional regulator	-
LGV81_RS06010 (LGV81_06015)	-	1214711..1215811 (+)	1101	WP_043897681.1	YeiH family protein	-
LGV81_RS06015 (LGV81_06020)	-	1215780..1216274 (-)	495	WP_016725753.1	MarR family winged helix-turn-helix transcriptional regulator	-
LGV81_RS06020 (LGV81_06025)	-	1216362..1217096 (+)	735	WP_020831610.1	thioredoxin family protein	-
LGV81_RS06030 (LGV81_06035)	-	1217497..1218348 (+)	852	WP_072633604.1	TIGR02391 family protein	-
LGV81_RS06035 (LGV81_06040)	-	1218345..1219379 (-)	1035	WP_072633603.1	phage late control D family protein	-
LGV81_RS06040 (LGV81_06045)	-	1219606..1219818 (-)	213	WP_155772879.1	hypothetical protein	-
LGV81_RS06045 (LGV81_06050)	-	1219815..1220024 (-)	210	WP_155772878.1	hypothetical protein	-
LGV81_RS06050 (LGV81_06055)	-	1220179..1220361 (-)	183	WP_155772877.1	hypothetical protein	-
LGV81_RS06055 (LGV81_06060)	-	1220364..1220726 (-)	363	WP_043897737.1	hypothetical protein	-
LGV81_RS06060 (LGV81_06065)	-	1220723..1221784 (-)	1062	WP_072633601.1	hypothetical protein	-
LGV81_RS06065 (LGV81_06070)	-	1222559..1223887 (-)	1329	WP_016725726.1	IS4 family transposase	-
LGV81_RS06070 (LGV81_06075)	-	1224001..1226163 (-)	2163	WP_072633600.1	VapE domain-containing protein	-
LGV81_RS06075 (LGV81_06080)	-	1226160..1226426 (-)	267	WP_155772876.1	hypothetical protein	-
LGV81_RS06080 (LGV81_06085)	-	1226446..1226658 (-)	213	WP_020832137.1	hypothetical protein	-
LGV81_RS06085 (LGV81_06090)	-	1226889..1227995 (-)	1107	WP_081373588.1	site-specific integrase	-
LGV81_RS06095 (LGV81_06100)	fdxA	1228357..1228683 (-)	327	WP_011001064.1	ferredoxin FdxA	-
LGV81_RS06100 (LGV81_06105)	recJ	1228854..1230551 (-)	1698	WP_020831662.1	single-stranded-DNA-specific exonuclease RecJ	-
LGV81_RS06105 (LGV81_06110)	-	1230552..1231631 (-)	1080	WP_020831663.1	Regulatory protein, RpfE type	-
LGV81_RS06110 (LGV81_06115)	-	1231704..1232954 (+)	1251	WP_011001067.1	lipoprotein-releasing ABC transporter permease subunit	-
LGV81_RS06115 (LGV81_06120)	lolD	1232947..1233681 (+)	735	WP_011001068.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
LGV81_RS06120 (LGV81_06125)	-	1233710..1234525 (+)	816	WP_016725802.1	TatD family hydrolase	-
LGV81_RS06125 (LGV81_06130)	comA	1234535..1237078 (+)	2544	WP_173940789.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene

Sequence

Protein

• Length: 847 a.a.
• Molecular weight: 90789.60 Da
• Isoelectric Point: 10.5253

>NTDB_id=624115 LGV81_RS06125 WP_173940789.1 1234535..1237078(+) (comA) [Ralstonia pseudosolanacearum strain RS647]
MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAALVAACAGFGWSDWRAQQRLSVVLA
PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRGWHERQREAEAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA
PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA
AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARI
VAADARDDGRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW
SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP
PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG
VPVRTMLASLPPGHRLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG
DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD
ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP

Nucleotide

• Length: 2544 bp

>NTDB_id=624115 LGV81_RS06125 WP_173940789.1 1234535..1237078(+) (comA) [Ralstonia pseudosolanacearum strain RS647]
ATGCGCGCCCTGCTGATCGGCTTCGTCGCGGGGTGCATGGCGCTGCAGACGCGGCCGGCGCTGGCGCCGGTGTGGCAGCC
GGCGCTGCTTGGGCTTGCTTGCCTGCTGGCGATGGCGTTGCTGCGGCGCGGCGCTCGGTTGCCCAGGCTCGTTCCCGTGA
TGGCCGCGCTGGTGGCGGCCTGCGCCGGCTTCGGCTGGAGCGATTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG
CCCGCATGGGAGGGCAAGGACATCCGCGCGACGGGCGTCGTGGCCGAGCTGCCCGAGGTCACCGAGGACGCCACGCGCTT
CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCGGCT
GGCATGAGCGGCAGCGGGAGGCGGAGGCCGCCACCGATCGCCGCGCCGGCATTCCCGATCTGCAGCCCGGCCAGCGCTGG
CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGATGGCGAATACGCGATGCTTGCCGA
CGATGTCCGTGCCGCGGGCTACGTGTACACGGGCAAACGCGCGCGCAATGCGTTGATGGGCGAAGCCGATGCCGGTTCCG
GTGTTGGGCTCCGTGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCACCTCCTGGCTGCGCTGCCCGAGGCACGCTACGCG
CCGGTGATCGTCGCGCTGGTGGTGGGCGACCAGAGCGGCATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCACCGGCAT
CAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGGCGCACTGTGGATGGCGCTGTGGC
GGCGCTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGCTGCCGCTGCGCATGCCGGCCCAGCGTGCGGGCGCCGTCGCC
GCCATGGCGGCGGCGTTCGCTTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGAC
CGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGCCTGTCGCTGTGCTGGGCGGCGGCCTTGGTGGCGCTGG
TGGATCCGTGGGCGGTCATGTCGGCGGGAGGCTGGCTGTCGTTCGGCGCCGTGGCGGTCATCTTCCTGGCCGCGCGGATC
GTTGCCGCCGATGCGCGGGACGACGGCCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCG
CGTCCAGCTGGCCGTGACGTTCGGTCTGCTGCCGTTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGG
CCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCACGGCGTTGCCCGAGCCATGG
TCGCAGCCGGTGCTGATATGGGCCGAGGCCAGCTTCGCCTGGCTCATGCCGTGGCTGGATGCGCTGGCGCTGCCCGGCGG
GTCGGTGTGGGTGGCGCCCGCCGCGCCGGCCTGGGCCTGGGGGCTGGCGGTGGTCGGTGTACCGTTGCTGCTCGTGCCGG
GTGGGTACCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGGTGCTGCTGCTGCCGATGCTGCTGGCACGCGCACCGGCGCCG
CCGCCGGGCGAGTTCCGCATGGTCGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCT
GCTGTTCGATACCGGTCCCCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCGGACATG
GGGTGCAGGCCATCGACACGCTGGTGGTCAGCCATGAGGACAGCGATCACGCCGGCGGCACCGAAACGGTGATGGCCGGT
GTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACCGGCTGGAGCGGCAGGCCCGCGCGCTCGGCATCGAGCC
CGCAGGCTGCGTGGCCGGGCAGCGCTGGGCATGGGACGGCGTCGCCTTCGAAATCCTGTATCCGGTGCAGGTGCCCTCCG
ATCGGGCGGCCGTGTCCAGCAATGCCCGCAGCTGTGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTGGCCGGC
GACATCGGCCGCGCCCAGGAAGCGGCGCTGATTGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCC
CCATCACGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCGCCGCAGGTGGCGGTGTTCCAGGTCGGCT
ACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGCTGCGCACCGAT
GCCACCGGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTG
GTCCTCGGCGCTGGAGGTGGCCGCCCTGGCAGAGACCACGGAGCCCACGGGCGCGCAGCCGTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (246-532)

• Beta-lactamase superfamily domain (Lactamase_B_2) (585-745)

• Domain of unknown function (DUF4131) (DUF4131) (24-198)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Ralstonia pseudosolanacearum GMI1000	99.292	100	0.993