Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMH79_RS16720 Genome accession   NZ_CP086259
Coordinates   3359037..3359666 (-) Length   209 a.a.
NCBI ID   WP_228355559.1    Uniprot ID   -
Organism   Escherichia coli strain SCPM-O-B-9427     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3354037..3364666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH79_RS16705 (LMH79_16730) helD 3354279..3356333 (-) 2055 WP_000420536.1 DNA helicase IV -
  LMH79_RS16710 (LMH79_16735) yccF 3356456..3356902 (+) 447 WP_001261231.1 YccF domain-containing protein -
  LMH79_RS16715 (LMH79_16740) yccS 3356912..3359074 (+) 2163 WP_000875044.1 YccS family putative transporter -
  LMH79_RS16720 (LMH79_16745) sxy/tfoX 3359037..3359666 (-) 630 WP_228355559.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LMH79_RS16725 (LMH79_16750) sulA 3359885..3360394 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LMH79_RS16730 (LMH79_16755) ompA 3360751..3361791 (+) 1041 WP_000750416.1 porin OmpA -
  LMH79_RS16735 (LMH79_16760) matP 3361867..3362319 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LMH79_RS16740 (LMH79_16765) ycbZ 3362505..3364265 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24143.03 Da        Isoelectric Point: 9.2180

>NTDB_id=624098 LMH79_RS16720 WP_228355559.1 3359037..3359666(-) (sxy/tfoX) [Escherichia coli strain SCPM-O-B-9427]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNPRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=624098 LMH79_RS16720 WP_228355559.1 3359037..3359666(-) (sxy/tfoX) [Escherichia coli strain SCPM-O-B-9427]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATCCCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995