Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LLY41_RS18310 Genome accession   NZ_CP086235
Coordinates   3630422..3631225 (-) Length   267 a.a.
NCBI ID   WP_304586062.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3625422..3636225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS18270 (LLY41_18230) - 3625504..3625728 (+) 225 WP_095246223.1 hypothetical protein -
  LLY41_RS18275 (LLY41_18235) mutY 3625762..3626856 (-) 1095 WP_304586054.1 A/G-specific adenine glycosylase -
  LLY41_RS18280 (LLY41_18240) - 3627057..3628037 (+) 981 WP_304586056.1 metal-dependent hydrolase -
  LLY41_RS18285 (LLY41_18245) - 3628418..3628687 (-) 270 WP_304586057.1 YfhJ family protein -
  LLY41_RS18290 (LLY41_18250) - 3628815..3628985 (+) 171 WP_095244474.1 small, acid-soluble spore protein K -
  LLY41_RS18295 (LLY41_18255) - 3629005..3629163 (+) 159 WP_009335831.1 YpzG family protein -
  LLY41_RS18300 (LLY41_18260) - 3629224..3629553 (-) 330 WP_095244473.1 YfhH family protein -
  LLY41_RS18305 (LLY41_18265) - 3629732..3630403 (+) 672 WP_304586061.1 SDR family oxidoreductase -
  LLY41_RS18310 (LLY41_18270) recX 3630422..3631225 (-) 804 WP_304586062.1 recombination regulator RecX Regulator
  LLY41_RS18315 (LLY41_18275) - 3631330..3632235 (+) 906 WP_304586063.1 TIGR01777 family oxidoreductase -
  LLY41_RS18320 (LLY41_18280) - 3632310..3632435 (+) 126 WP_095244469.1 YfhE family protein -
  LLY41_RS18325 (LLY41_18285) - 3632529..3632717 (+) 189 WP_048011767.1 YfhD family protein -
  LLY41_RS18330 (LLY41_18290) - 3632774..3633277 (-) 504 WP_304586064.1 DoxX family protein -
  LLY41_RS18335 (LLY41_18295) - 3633600..3634661 (+) 1062 WP_304586065.1 M20 family metallopeptidase -
  LLY41_RS18340 (LLY41_18300) - 3634737..3635402 (+) 666 WP_076260313.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31563.94 Da        Isoelectric Point: 5.3767

>NTDB_id=623920 LLY41_RS18310 WP_304586062.1 3630422..3631225(-) (recX) [Cytobacillus firmus strain T8]
MPTITKITVQKKNTDRYNIYMDYGKGEEYAFSVDEDVLIKHQLKKGMELDEFSLNEIGYQDDIRKAYNRAIHYLSRRMRS
ETEVRKHLAEKEVEDPVIQEVIHKLYNYHFLNDEEFAAAFVRTQMNTSDKGKGLIRTELKEKGISPQLIEMALEEYPRDA
EVAAAIRLCEKYSKKYARDSSKILKQKLEQMLMRKGFNFDIIQEAVSETEIEKEEDEELAALKFQAEKARKKYANLPEFE
YTQKMKQALFRKGFSFDLIEQFLSEEE

Nucleotide


Download         Length: 804 bp        

>NTDB_id=623920 LLY41_RS18310 WP_304586062.1 3630422..3631225(-) (recX) [Cytobacillus firmus strain T8]
ATGCCGACTATTACGAAAATCACAGTCCAGAAAAAAAACACAGACCGCTACAATATATATATGGATTATGGGAAAGGTGA
AGAATATGCATTTAGTGTGGATGAAGATGTTTTAATTAAGCATCAGCTCAAAAAAGGAATGGAGCTAGATGAATTCTCTT
TAAATGAAATTGGCTATCAGGATGATATCCGGAAAGCCTATAACAGGGCTATTCATTATTTATCCAGAAGAATGCGCTCA
GAAACCGAAGTCCGCAAACATTTAGCTGAAAAAGAAGTGGAAGATCCGGTTATTCAAGAAGTTATCCACAAATTGTATAA
TTACCATTTTCTAAATGATGAAGAATTTGCAGCAGCTTTTGTGCGTACACAAATGAACACATCAGATAAAGGAAAAGGCC
TGATCCGCACAGAACTGAAGGAGAAAGGGATTTCCCCTCAATTAATCGAAATGGCATTGGAGGAATATCCAAGGGATGCT
GAAGTAGCTGCTGCCATAAGGCTGTGTGAAAAGTATTCAAAGAAATATGCCCGTGATTCATCAAAAATCCTTAAACAAAA
GCTGGAACAGATGTTAATGCGCAAAGGCTTTAATTTCGACATCATTCAAGAAGCCGTATCTGAAACGGAGATTGAAAAAG
AAGAGGATGAAGAACTTGCTGCCCTGAAGTTCCAAGCGGAAAAAGCAAGAAAGAAATATGCAAACCTTCCTGAGTTCGAA
TATACGCAGAAAATGAAGCAAGCCTTGTTCAGAAAAGGTTTTTCTTTTGATTTAATAGAGCAATTTTTAAGTGAAGAAGA
ATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

50.187

100

0.502