Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LLY41_RS16805 Genome accession   NZ_CP086235
Coordinates   3338116..3339933 (-) Length   605 a.a.
NCBI ID   WP_304585915.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3333116..3344933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS16775 (LLY41_16735) - 3333435..3334097 (-) 663 WP_304585911.1 GTP pyrophosphokinase family protein -
  LLY41_RS16780 (LLY41_16740) - 3334235..3334612 (-) 378 WP_304585912.1 hypothetical protein -
  LLY41_RS16785 (LLY41_16745) - 3334811..3335410 (+) 600 WP_304585913.1 CYTH domain-containing protein -
  LLY41_RS16790 (LLY41_16750) - 3335433..3336074 (+) 642 WP_304585914.1 lytic transglycosylase domain-containing protein -
  LLY41_RS16795 (LLY41_16755) - 3336323..3336727 (+) 405 WP_095243933.1 globin -
  LLY41_RS16800 (LLY41_16760) - 3336730..3337599 (+) 870 WP_304588050.1 ClpXP adapter SpxH family protein -
  LLY41_RS16805 (LLY41_16765) pepF 3338116..3339933 (-) 1818 WP_304585915.1 oligoendopeptidase F Regulator
  LLY41_RS16810 (LLY41_16770) - 3340055..3341245 (-) 1191 WP_304585916.1 competence protein CoiA -
  LLY41_RS16815 (LLY41_16775) mecA 3341404..3342069 (-) 666 WP_048010951.1 adaptor protein MecA -
  LLY41_RS16820 (LLY41_16780) spxA 3342422..3342817 (-) 396 WP_009331204.1 transcriptional regulator SpxA -
  LLY41_RS16825 (LLY41_16785) - 3343292..3343867 (-) 576 WP_048010952.1 GNAT family N-acetyltransferase -
  LLY41_RS16830 (LLY41_16790) - 3344107..3344295 (+) 189 WP_076256698.1 hypothetical protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70041.65 Da        Isoelectric Point: 4.9475

>NTDB_id=623910 LLY41_RS16805 WP_304585915.1 3338116..3339933(-) (pepF) [Cytobacillus firmus strain T8]
MTNETTVKKLPARNEILPEDTWRLEDIFPSDDEWNKEYSEIQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGFLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRYDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDMILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIIIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMEKLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=623910 LLY41_RS16805 WP_304585915.1 3338116..3339933(-) (pepF) [Cytobacillus firmus strain T8]
ATGACTAATGAAACAACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTTACCTGAAGATACTTGGCGTTTGGAGGATAT
ATTCCCTTCTGATGATGAATGGAACAAGGAATACAGTGAGATACAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGGA
GGCTCGGGGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAACTTGTA
TTCTGAAGCTGCTAGTGCGCTTGCCTATATTGTTCCTGAGCTGCTGGCTGAAGATGAAGAGAAGATTGCAGGCTTTTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAAGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACCTTTGGCATGCTGAATAATGCTGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTGGAAAGTG
ATGAGCAGCGTGTCCGGTATGATGCATTCAAAGCTGTATATGAAACTTATGGGAAGTTTCGCAATACATTTGCAAGCACT
CTAAGCGGAAACGTAAAGAAAGATAATTTCAACGCAAAGATCCGGAATTATGATTCCGCACGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACTATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAAGCAAAAGATATGATTTTAAAAGGATTAAAGCCGCTTGGTGAAGACTATCTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTGGATGTTCATGAGAATAAGGGCAAAAGGAGCGGCGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGATAATGTGAACAACTTATTTACTCTTGCTCATGAATTTGGGCATTCG
GTTCACAGCTATTACACAAGAAAATATCAGCCATACCCTTATGGAAACTACTCAATTTTTGTTGCAGAGGTTGCCTCTAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGTCAGACCATGTTTGCAGAATTTGAACATCTTATTCACCAAAAGGCGCAA
AACAATGAAGCCCTGACTGCTGATTCATTGACTAAAGAATATTATGAACTTAATAAGAAGTATTTTGGGGATGAAGATAT
CATAATTGATGAGGAAATCGGCCTAGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATCCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGGAGCTCGGACTACCCAATTGAAGTGCTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAATGAAATGGAAAAATTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.171

96.86

0.486