Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LLY41_RS06845 Genome accession   NZ_CP086235
Coordinates   1364884..1365954 (+) Length   356 a.a.
NCBI ID   WP_095245702.1    Uniprot ID   -
Organism   Cytobacillus firmus strain T8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359884..1370954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY41_RS06805 (LLY41_06815) - 1360107..1360280 (-) 174 WP_048008269.1 DUF2759 domain-containing protein -
  LLY41_RS06810 (LLY41_06820) - 1360406..1360885 (-) 480 WP_095245697.1 hypothetical protein -
  LLY41_RS06815 (LLY41_06825) - 1360973..1361608 (+) 636 WP_095245698.1 MBL fold metallo-hydrolase -
  LLY41_RS06820 (LLY41_06830) - 1361813..1362882 (+) 1070 Protein_1307 class I SAM-dependent methyltransferase -
  LLY41_RS06825 (LLY41_06835) - 1362918..1363163 (-) 246 WP_009332938.1 DUF2626 domain-containing protein -
  LLY41_RS06830 (LLY41_06840) - 1363317..1364015 (-) 699 WP_304587250.1 metalloregulator ArsR/SmtB family transcription factor -
  LLY41_RS06835 (LLY41_06845) - 1364262..1364615 (+) 354 WP_095245701.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LLY41_RS06845 (LLY41_06855) comGA 1364884..1365954 (+) 1071 WP_095245702.1 competence type IV pilus ATPase ComGA Machinery gene
  LLY41_RS06850 (LLY41_06860) comGB 1365941..1366972 (+) 1032 WP_304587251.1 competence type IV pilus assembly protein ComGB -
  LLY41_RS06855 (LLY41_06865) comGC 1366972..1367295 (+) 324 WP_095245703.1 competence type IV pilus major pilin ComGC -
  LLY41_RS06860 (LLY41_06870) comGD 1367292..1367732 (+) 441 WP_304587253.1 competence type IV pilus minor pilin ComGD -
  LLY41_RS06865 (LLY41_06875) - 1367716..1368045 (+) 330 WP_304587254.1 phosphatase -
  LLY41_RS06870 (LLY41_06880) comGF 1368059..1368475 (+) 417 WP_304587255.1 competence type IV pilus minor pilin ComGF -
  LLY41_RS06875 (LLY41_06885) comGG 1368465..1368848 (+) 384 WP_304587256.1 competence type IV pilus minor pilin ComGG -
  LLY41_RS06880 (LLY41_06890) - 1368861..1369358 (+) 498 WP_304587258.1 shikimate kinase -
  LLY41_RS06885 (LLY41_06895) - 1369437..1369622 (+) 186 WP_095245709.1 YqzE family protein -
  LLY41_RS06890 (LLY41_06900) - 1369666..1370460 (-) 795 WP_304587259.1 YqhG family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40041.18 Da        Isoelectric Point: 8.3400

>NTDB_id=623899 LLY41_RS06845 WP_095245702.1 1364884..1365954(+) (comGA) [Cytobacillus firmus strain T8]
MSIIERMAERIIKDAVRSHASDIHIIPRRKDTLIQLRFGSQLTPRLYLPKEECDRLISHFKFTASMDIGEKRRPQSGAYS
LEVDGQMIGLRFSTLPSSHSESLVIRILPQQEQIPFYQISLFPDMTRKMLALLKHAHGLIIFTGPTGSGKTTTLYSLLNE
TSHMFHRNVITLEDPIEKENDLVLQVQVNEKAGVSYSAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTMH
TRDAEGAVYRLAEFGVNMLEIEQTLVAVTAQRLVELNCPYCEGECSPFCYGYGRWKRASVFELLAGRALNASIKNARGES
SHVKYRTLKEVITKGIALGYIKETEYSRWVHGNGET

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=623899 LLY41_RS06845 WP_095245702.1 1364884..1365954(+) (comGA) [Cytobacillus firmus strain T8]
TTGAGTATAATTGAAAGAATGGCAGAACGAATTATTAAAGACGCTGTCAGAAGCCATGCTTCCGACATCCACATCATTCC
CCGAAGAAAAGACACACTCATTCAGCTGAGGTTCGGCAGCCAATTGACCCCCAGGCTTTATCTTCCCAAAGAAGAGTGTG
ACAGATTGATTTCCCATTTTAAATTTACAGCATCGATGGATATTGGTGAAAAAAGAAGGCCGCAGAGCGGTGCATACTCA
CTTGAAGTAGACGGACAAATGATTGGCCTGCGCTTTTCAACACTCCCATCAAGCCACAGCGAAAGCCTTGTTATCAGAAT
TCTCCCCCAGCAGGAACAAATTCCTTTTTACCAGATCAGCCTTTTTCCAGACATGACAAGAAAAATGCTGGCACTGCTGA
AGCATGCTCACGGATTGATTATTTTCACTGGCCCGACCGGCAGCGGTAAAACCACAACACTGTATTCCCTTCTGAATGAA
ACCTCCCATATGTTCCATCGCAATGTCATCACCCTGGAAGATCCCATTGAAAAAGAGAATGACTTAGTTCTTCAAGTCCA
AGTGAATGAGAAAGCCGGCGTGTCTTATTCTGCAGGCTTAAAAGCAATCCTTCGCCATGACCCCGATATCATTATGGTGG
GTGAAATCCGGGATGCGGAAACGGCGAAGATTGCAGTTAGAGCAGCTCTTACCGGTCACCTTGTATTAAGCACCATGCAT
ACCCGGGATGCTGAGGGGGCTGTATACCGTCTGGCTGAGTTTGGAGTGAACATGCTGGAAATTGAGCAGACTTTGGTGGC
GGTCACCGCTCAGCGCCTAGTCGAATTGAATTGTCCATATTGTGAAGGGGAATGCTCGCCATTCTGCTATGGATATGGCA
GGTGGAAACGGGCGAGTGTGTTTGAATTGCTTGCAGGAAGGGCGCTCAATGCCTCCATAAAGAATGCAAGAGGAGAAAGC
AGCCATGTTAAGTATCGAACACTGAAGGAAGTCATAACTAAAGGGATTGCTCTGGGCTATATAAAGGAAACGGAGTACAG
CAGGTGGGTACATGGCAATGGAGAAACCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.25

98.876

0.556
  pilB Glaesserella parasuis strain SC1401

39.714

98.315

0.39