Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LLY39_RS03945 Genome accession   NZ_CP086234
Coordinates   820617..821978 (+) Length   453 a.a.
NCBI ID   WP_091129500.1    Uniprot ID   -
Organism   Flavobacterium anhuiense strain T4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815617..826978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLY39_RS03925 (LLY39_03915) - 817129..817935 (-) 807 WP_008465476.1 glycogen/starch synthase -
  LLY39_RS03930 (LLY39_03920) panC 818013..818892 (+) 880 Protein_764 pantoate--beta-alanine ligase -
  LLY39_RS03935 (LLY39_03925) panD 818907..819257 (+) 351 WP_008465481.1 aspartate 1-decarboxylase -
  LLY39_RS03940 (LLY39_03930) - 819463..820617 (+) 1155 WP_091129805.1 alpha/beta hydrolase-fold protein -
  LLY39_RS03945 (LLY39_03935) radA 820617..821978 (+) 1362 WP_091129500.1 DNA repair protein RadA Machinery gene
  LLY39_RS03950 (LLY39_03940) - 821999..823963 (+) 1965 WP_250348537.1 biosynthetic peptidoglycan transglycosylase -
  LLY39_RS03955 (LLY39_03945) - 824123..825160 (-) 1038 WP_250348538.1 aldo/keto reductase -
  LLY39_RS03960 (LLY39_03955) - 825741..825995 (-) 255 WP_250348539.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49769.14 Da        Isoelectric Point: 5.8267

>NTDB_id=623865 LLY39_RS03945 WP_091129500.1 820617..821978(+) (radA) [Flavobacterium anhuiense strain T4]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPTSKAPKPLKINEIDSTQEVRMDTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQVSLKLPYKTLYVSGEESQKQIKMRAERITPNSDNCYILTETKTQNIFKQI
ETIEPEVVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSELGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFDTIFVSKYNKIALKNTGIKIELVAKIEDVASILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=623865 LLY39_RS03945 WP_091129500.1 820617..821978(+) (radA) [Flavobacterium anhuiense strain T4]
ATGTCAAAAGTTAAAACTTCCTTTTTCTGCCAAAACTGCGGAACCCAATATGCCAAATGGCAAGGGCAATGCAACGCGTG
CAAAGAATGGAATACGATTGCCGAAGAAATTATCCAGAAACAGGATAAAGTAGCTTGGAAAAGCGAGCCTACTCCAACAA
GCAAAGCACCAAAGCCTTTAAAAATTAACGAAATTGATTCCACACAGGAAGTCCGAATGGACACAACCGACAGCGAATTG
AATCGTGTTTTGGGTGGCGGACTTGTTCCTGGATCTTTAACACTTTTAGGTGGTGAACCCGGCATCGGAAAAAGTACACT
TTTGCTTCAAGTTTCGTTAAAACTACCTTATAAGACATTATACGTTTCTGGAGAAGAAAGCCAGAAACAGATAAAAATGC
GTGCAGAAAGAATTACGCCAAACAGCGACAACTGCTATATTCTTACTGAAACCAAAACGCAAAACATCTTCAAACAGATT
GAAACCATTGAGCCTGAAGTAGTCATTATCGACTCGATTCAGACCTTACATACCGATTATATCGAATCTACAGCGGGAAG
CATTTCCCAGATTCGCGAAACCACGGCAGAGTTGATCAAATTTGCTAAAGAAAGCAACATTCCAGTAATTTTAATTGGCC
ATATTACCAAAGACGGAAATATCGCAGGGCCAAAAATTTTAGAACATATGGTTGACACCGTTCTTCAATTTGAAGGAGAT
AGAAATCATATCTATAGAATTTTGCGTTCGCTTAAAAACCGTTTTGGTTCAACTTCCGAACTTGGTATTTATGAAATGCT
GGGAAGCGGTTTACGCGAAGTAAGCAATCCTTCCGAAATTCTAATTTCCCATAAAGACGAAGAACTTTCGGGAACTGCAA
TTGCAACAACTCTAGAAGGCATGCGGCCGTTGATGATTGAAATACAATCTTTGGTTAGCACCGCAGTTTACGGAACTCCT
CAGCGAAGCACAACAGGTTACAATGCCAAAAGGCTAAACATGATTTTGGCTGTTTTAGAAAAAAGAGCTGGATTCCGTTT
AGGCGCAAAAGATGTTTTCCTGAATGTTACCGGAGGAATTTCTGTTGATGATCCTGCAATTGACTTGGCCGTTGTTGCCG
CAATTTTATCTTCTAACGAAGACATTCCGGTTGGAAAAGGTTTCTGCTTTGCTGGCGAAGTTGGTTTATCCGGTGAAATC
CGTCCTGTAAATCGTGTGGATCAGCGCATTCAGGAAGCTGAAAAATTAGGTTTCGATACTATCTTTGTTTCTAAATATAA
TAAAATAGCTTTAAAGAATACGGGAATTAAAATTGAACTTGTTGCAAAAATTGAAGATGTTGCCAGCATTCTTTTTGGCT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.93

100

0.486
  radA Streptococcus mitis SK321

50.585

94.26

0.477
  radA Streptococcus pneumoniae Rx1

50.585

94.26

0.477
  radA Streptococcus pneumoniae D39

50.585

94.26

0.477
  radA Streptococcus pneumoniae R6

50.585

94.26

0.477
  radA Streptococcus pneumoniae TIGR4

50.585

94.26

0.477
  radA Streptococcus mitis NCTC 12261

50.585

94.26

0.477