Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LMB17_RS03400 Genome accession   NZ_CP086220
Coordinates   737350..737979 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 779     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 732350..742979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMB17_RS03380 (LMB17_03375) ycbZ 732751..734511 (-) 1761 WP_072644848.1 Lon protease family protein -
  LMB17_RS03385 (LMB17_03380) matP 734697..735149 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LMB17_RS03390 (LMB17_03385) ompA 735225..736265 (-) 1041 WP_000750416.1 porin OmpA -
  LMB17_RS03395 (LMB17_03390) sulA 736622..737131 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LMB17_RS03400 (LMB17_03395) sxy/tfoX 737350..737979 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LMB17_RS03405 (LMB17_03400) yccS 737942..740104 (-) 2163 WP_000875020.1 YccS family putative transporter -
  LMB17_RS03410 (LMB17_03405) yccF 740114..740560 (-) 447 WP_001261231.1 YccF domain-containing protein -
  LMB17_RS03415 (LMB17_03410) helD 740683..742737 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=623834 LMB17_RS03400 WP_000839153.1 737350..737979(+) (sxy/tfoX) [Escherichia coli strain 779]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=623834 LMB17_RS03400 WP_000839153.1 737350..737979(+) (sxy/tfoX) [Escherichia coli strain 779]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1