Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LLJ53_RS28340 Genome accession   NZ_CP086213
Coordinates   5963815..5964372 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5958815..5969372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLJ53_RS28320 (LLJ53_28315) pilR 5960091..5961428 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LLJ53_RS28325 (LLJ53_28320) thiO 5961474..5962568 (-) 1095 WP_023089635.1 glycine oxidase ThiO -
  LLJ53_RS28330 (LLJ53_28325) - 5962703..5963212 (+) 510 WP_003112829.1 Tfp pilus assembly protein FimT/FimU -
  LLJ53_RS28335 (LLJ53_28330) - 5963318..5963824 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LLJ53_RS28340 (LLJ53_28335) pilV 5963815..5964372 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  LLJ53_RS28345 (LLJ53_28340) pilW 5964369..5965193 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  LLJ53_RS28350 (LLJ53_28345) pilX 5965190..5965777 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  LLJ53_RS28355 (LLJ53_28350) pilY1 5965789..5969280 (+) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=623775 LLJ53_RS28340 WP_003119423.1 5963815..5964372(+) (pilV) [Pseudomonas aeruginosa strain Pa3]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=623775 LLJ53_RS28340 WP_003119423.1 5963815..5964372(+) (pilV) [Pseudomonas aeruginosa strain Pa3]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995